Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0138 ATGGGAAGAGGGAGAGTTGAACTGAAGAGGATAGAGAACAAAATCAACAGGCAAGTCACATTTGCTAAGAGAAGAAATGGGTTACTCAAGAAGGCTTATGAGCTCTCAGTCCTCTGTGATGCCGAGGTTGCACTCATCATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCAGCAGCACCTCCTGCATGATGAAAACACTGGATAAGTACCAGAAGTACAGTTACAGTGCATCGGAGACTAGTCCATCAATCACTGACACTCAGACGAAATATCAAGAATATGTGAGACTAAAAGCAAAGGTAGAAGTGCTCCAACACTCACAAAGGAACCTACTCGGCGAAGATCTTGCCCAAATGAACACAACTGAGCTTGAGCAGCTTGAGAATCAACTAGAAACAGCACTGAGGAATATTAGGTCAACAAAGACTCAATTCATGCTTGACCAGCTTGATGATCTTTACAACCGAGAAACAGTGCTTGTTGAAACTAATAATGCGTTAAGGAGTAAGTTGGAAGAAACTAATAACTCAAAAGTTCCAGCGACACTATCATTGGAAGCAGGAGGACCAAACATCCATTATACCCACTTTCCTCCTCATTCAGAAGGCCTTTTCCACCCTTCAGGAGTTAACTCCAACTTGCAAATTGGATACAGCCCAACGGGTAGTGATGATGACGTAAATGTTGATGCTTCATCCTTAAATATGCATGGATTCGTCTCTGGGTGGATGCTTTGA 738 0.4309 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSCMMKTLDKYQKYSYSASETSPSITDTQTKYQEYVRLKAKVEVLQHSQRNLLGEDLAQMNTTELEQLENQLETALRNIRSTKTQFMLDQLDDLYNRETVLVETNNALRSKLEETNNSKVPATLSLEAGGPNIHYTHFPPHSEGLFHPSGVNSNLQIGYSPTGSDDDVNVDASSLNMHGFVSGWML* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0138 245 Coils Coil 117 144 - -
Lan1g0138 245 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan1g0138 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan1g0138 245 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Lan1g0138 245 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 229 - -
Lan1g0138 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Lan1g0138 245 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Lan1g0138 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lan1g0138 245 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Lan1g0138 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan1g0138 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan1g0138 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan1g0138 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan1g0138 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan1g0138 245 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0138 Lan-Chr1 1025709 1030407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0138 1 245 MADS-box Gene Family AT5G15800 53.053 1.10e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan1g0138 K-box 7.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0138 K09264 K09260 gmx:100797819 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1221 12 18239112 18243506 Lan1g0138 1 1025709 1030407 LSH