Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0128 ATGGCCAAATCAGTGATCCCAAATGCTATTTCTCTTCTTCTTGCTAACCCTTCACCCGATTCTTCTTCACTTATCCCAGACATTGTTCTTCAAGTCCTTGATCTCAAACCTACTGGCAACAGATTCATGTTTAATGCTAATGATGGGAATTTGAAGATGAAGGCGATTCTTCCTTCCAATCTGAACCCTGAGGTACACTCTGGGAATATTCAGAATCTAGGTCTTATTCGCATCATTGATTACACTGTTAATGACATTCCAAACAAACCTGAGAAATATCTTATTGTAACCAAATGTGAACCAGTTTCCCCTGCGCTTGAAGCGGAGATAAAGAATGAGGTCAAAACTGCTGGTTCTGCTTCTTCTGCTACTGGCATTATTTTGAAGCCAAAACAAGAAATGGTGGCAAAATCTGCTGCTCAGATTGTTCATGAACAGCATCAAAATGTGACTCGTACTGAACGTAAGGCCATGTCGCGGAGGGTGAATCCTCTTGTATCATTGAATCCCTATCAGGGTAATTGGACTATCAAGGTTAGTGTTACAAGCAAAGGGAACATGCATACATATAAGAATGCTAGAGGAGAAGGTTGTGTCTTCAATGTGGAGTTGACTGATGAAGATGGTACTCAGATTCAAGCAAAAATGTTTAATGAGGCTGCAAGGAAATTTTATGACAAGTTTGTTCTAGGAAAAGTTTACTACATTTCAAAGGGAACTTTAAAAGTTGCTAATAAACAGTTTAAAACTGTCCAAAATGATTATGAAATGACACTGAATGATTACTCTGAGGTGGAAGAGGTTGCTGAAGAAGCGGGTTTTGTTCCTGCAACAAAGTTCAGTTTTGTTCAGATTGATCAGTTGGGTCCTTATGTCAATAAGAATGAACTTGTTGATATTGTTGGAGTTGTTCAGAATGTGTCCTCAACAATGAGCATTAGAAGGAAGAGTAACAATGAGACTGTTCCAAAGCGTGATATTACTATTGCCGATGACACAAAGAAGACTGTTGTTTTGTCATTGTGGAATGATCTTGCTACTAATATAGGGCAAGAGTTGCTTGACATTGCTGATCAATCTCCAGTGGTTGTTATCAAATCCCTCAAGGTTGGGGACTTCCATGGTGTCTCATTGTCGACTGTAAGCAGAAGTGCAGTTCTGATAAATCCAGACATACCTGAAGCGAAGAAACTCAGATGCTGGTATGATTCTGAAGGCAAGGAAGCTGCAATGGCTTCCATAGGGGTTGGATCAAGTCCTGCAACCACGTACGGAAACAGATCAGTGTACTCTGACCGTGTTTTGCTTTCTCACATAACTTCAAACCCATCCTTGGGGGATGACAAGCCTGCATTTTTCAGCATTAGAGGATATATAAGCTTTATCAAGTCTGACCAGGCAATGTGGTACCGTGCATGTAAAACTTGCAACAAGAAAGTTACTGAAAGCATTGGTGCTGGGTACTGGTGTGAGGCTTGCCAAAAAAATGATGATCAATGCAATTTAAGGTATATTATGATTGTAAAAGTTTCTGATGCAAGTGGAGAGGCTTTTCTCTCAATCTTTAATGAGGAGGCTGAGAAAATTATTGGATGCTCTGCTGATGAGCTTGACAACCTTAAATCACAGGATGGAGAAGATAGTCCTTATCAACTGAAATTGAAACAAGCTATTTGGGTTCCACATCTTTTCCGAGTTAGTGTTACTCAGAATGAGTATAACAATGAGAAGCGGCAAAGGATTACAGCTCGATCAGTTGTTCCTGTTGACTTCGCTACTGAGTCAAGACTCCTCCTGGAAGATATATCAAAGATGGGAGTTTCTCAATAA 1830 0.4 MAKSVIPNAISLLLANPSPDSSSLIPDIVLQVLDLKPTGNRFMFNANDGNLKMKAILPSNLNPEVHSGNIQNLGLIRIIDYTVNDIPNKPEKYLIVTKCEPVSPALEAEIKNEVKTAGSASSATGIILKPKQEMVAKSAAQIVHEQHQNVTRTERKAMSRRVNPLVSLNPYQGNWTIKVSVTSKGNMHTYKNARGEGCVFNVELTDEDGTQIQAKMFNEAARKFYDKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNDYSEVEEVAEEAGFVPATKFSFVQIDQLGPYVNKNELVDIVGVVQNVSSTMSIRRKSNNETVPKRDITIADDTKKTVVLSLWNDLATNIGQELLDIADQSPVVVIKSLKVGDFHGVSLSTVSRSAVLINPDIPEAKKLRCWYDSEGKEAAMASIGVGSSPATTYGNRSVYSDRVLLSHITSNPSLGDDKPAFFSIRGYISFIKSDQAMWYRACKTCNKKVTESIGAGYWCEACQKNDDQCNLRYIMIVKVSDASGEAFLSIFNEEAEKIIGCSADELDNLKSQDGEDSPYQLKLKQAIWVPHLFRVSVTQNEYNNEKRQRITARSVVPVDFATESRLLLEDISKMGVSQ* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0128 609 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 603 - -
Lan1g0128 609 CDD RPA1_DBD_A 164 260 - -
Lan1g0128 609 SUPERFAMILY Nucleic acid-binding proteins 4 106 IPR012340 -
Lan1g0128 609 SUPERFAMILY Nucleic acid-binding proteins 164 270 IPR012340 -
Lan1g0128 609 CDD RPA1_DBD_C 435 604 IPR013955 -
Lan1g0128 609 Pfam Replication factor-A protein 1, N-terminal domain 7 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lan1g0128 609 SUPERFAMILY Nucleic acid-binding proteins 280 407 IPR012340 -
Lan1g0128 609 Pfam Replication protein A OB domain 292 389 IPR031657 -
Lan1g0128 609 SUPERFAMILY Nucleic acid-binding proteins 431 605 IPR012340 -
Lan1g0128 609 CDD RPA1_DBD_B 297 403 - -
Lan1g0128 609 Gene3D - 5 115 IPR012340 -
Lan1g0128 609 Gene3D - 275 415 IPR012340 -
Lan1g0128 609 Gene3D - 161 270 IPR012340 -
Lan1g0128 609 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 20 604 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lan1g0128 609 Gene3D - 416 605 IPR012340 -
Lan1g0128 609 Pfam Replication factor-A C terminal domain 452 598 IPR013955 -
Lan1g0128 609 Pfam OB-fold nucleic acid binding domain 176 263 IPR004365 GO:0003676
Lan1g0128 609 Coils Coil 523 543 - -
Lan1g0128 609 PANTHER REPLICATION FACTOR A 1, RFA1 5 603 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0128 Lan-Chr1 943344 946518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0128 1 609 Core DNA Replication Machinery Family AT5G08020 67.705 0.0 885
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0128 K07466 - qsu:112017680 928.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1063 1 20806516 20809722 Lan1g0128 1 943344 946518 LSH