Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0126 ATGGCTTTCTTTGGTAAACTTGGGAATATACTTAGGCATGCAGCTTCAGCAAACCAAAGGATTAGTTCAGAGATCCGTTCATCCCCGTCTTTTTTTCAGGCTATTCGGTGCATGACATCTGCTCCTAGCTCAAAGCTTTTTGTTGGAGGCATTTCATTTAATACCGACGAGCAAAGTTTCAGGGAAGCCTTTTCAAAATATGGTGAAGTTGTTGATGCAAGGATAATTATGGATCGTGAAAGTGGTAGATCCAGAGGATTTGGCTTCATCACTTACAGTTCAGTTGAGGAAGCATCAAGTGCCATTCAGGCTTTGGATGGACAGGATCTTCATGGTCGCCAAGTCAGGGTAAATTATGCTAATGATAGGACTCGTGGCGGCGGCGGCGGTGGCTTTGGCGGTTCTTATGGCAACGCACCATATGGTGGTGGAGCTGGATATGGAGGTGGTTATGGCAACTCTCAGTACGGTTCAGGTGGTGGTGGTTATGGTGGTGCTGGTGGCTATGGTGGCAATTCTGCTGGAGGTTACGGTGGTGGTGGATATGGTGGAAGCAGCTATGGATCCGGTAGCAATTATGGCAGCGGCGACTCTGGCAATAACTACTCTGCTCCTGACAGTTTTGGAGCTCCTGGTGCTGCTCCCGACAGTTTTGGACTCCTGGTGCTGCTCCCGACAGTTTTGGAACTCCAAGTGCTGCTCCCGACAGTTTTGGTACCCCAAGTGCTGGTGGGGGTTACAGTGGAGTTGGAGGCTATGGTGATAACAGTGGGAGTTTTGGTGTTGCCGGTGGTGTTGGAGGAAATGAAAGCTCTCCTGGTTTCGGGGGCAACAATGGTTATGCCAGTGGCAGCAACTTTGCTGGTGGATTTGACGGTAGCACTGGCCAGTTCGATAGCAAGGAAAGCAGCAATGTGGGTGAGGATTTGGGAGGTTTTGGAGACTCAAGTGGAGGAAATTACAGGGATGATGCGGATGATTTTGCCAAAAGGGCTTGATGGAAGCATATATAGTTTTTAG 1020 0.4902 MAFFGKLGNILRHAASANQRISSEIRSSPSFFQAIRCMTSAPSSKLFVGGISFNTDEQSFREAFSKYGEVVDARIIMDRESGRSRGFGFITYSSVEEASSAIQALDGQDLHGRQVRVNYANDRTRGGGGGGFGGSYGNAPYGGGAGYGGGYGNSQYGSGGGGYGGAGGYGGNSAGGYGGGGYGGSSYGSGSNYGSGDSGNNYSAPDSFGAPGAAPDSFGLLVLLPTVLELQVLLPTVLVPQVLVGVTVELEAMVITVGVLVLPVVLEEMKALLVSGATMVMPVAATLLVDLTVALASSIARKAAMWVRIWEVLETQVEEITGMMRMILPKGLDGSIYSF* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0126 339 CDD RRM_HP0827_like 45 121 - -
Lan1g0126 339 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 206 - -
Lan1g0126 339 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 122 IPR000504 GO:0003723
Lan1g0126 339 SMART rrm1_1 45 118 IPR000504 GO:0003723
Lan1g0126 339 SMART rrm2_1 45 118 IPR003954 GO:0003676
Lan1g0126 339 SUPERFAMILY RNA-binding domain, RBD 39 134 IPR035979 GO:0003676
Lan1g0126 339 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 206 - -
Lan1g0126 339 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 116 IPR000504 GO:0003723
Lan1g0126 339 Gene3D - 13 138 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0126 Lan-Chr1 934330 937064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0126 41 123 Eukaryotic Initiation Factors Gene Family AT2G36660 32.530 4.68e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0126 K12741 - gmx:100799124 204.142