Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0123 ATGGCGGCGTCTACGAAGCGGTGCCACTACGAGGTCCTCGCCGTCTCCCGTGACTCCTCCCCCGACGAAATCCGATCAGCCTACCGCCGCCTCGCCCTTCAGCGCCACCCTGACAAGCTCGTCCAATCCGGTATCTCCCAATCCGAAGCCACCGCTCAGTTTCAGGAGCTTCAGCATGCCTACGAGGTTCTCTCTGATCCTAAGGAACGTGCTTGGTATGACTCTCACCGTTCTCAGATCCTATTTTCTGACACTGACTCCGTTGGTAGCTCCGTTGTCCCTGACCTATTCTCATTTTTCTCTAACACCGTCTATAACGGTTACTCCGATTCCGGTAAGGGTTTTTATAAGGTTTATTCTGATGTGTTTGATAAAATTCACGCTAATGAGATCAATTTCGCGAAGAAGATGGGGATTGGTGTTGATTCGGTTCGACAGGCTCCGGTTATGGGGAATTTGGAGAGTCCGTATGCTCAGGTTACAGCGTTTTATAGTTATTGGATTGGTTTTGCGACGGTTATGGATTTCTGTTGGGTTGATGAGTATGATGTTATGGCTGGTCCGGACAGGAGAACAAGGCGCCGTATGGAGGAGGAAAATAATAAGGCGAGGAGGAAGGCGAGGAAGGAGTATAATGATACTGTGAGGAAGTTGGCTGATTTTGTGAAGAAGAGGGATAAGAGGGTGATCGATATGAAGGTGAAGAAGAATGCGGAGATGGAGAAGAAAAAGGAGGAGGAGAGGGAGATGAAGAGGAGGTTGGAGAAGGAGAAGAAGGAGAGGGCCATGAAGTATGAGGAGCCGGATTGGGCGAAGGTGAATGAGGATGAGGTGGATGATTGGGTTGAGGAGTTAGAAGAGGAGGAGGAGGAGAAGAAGGAAGAGAAGGAATTTTATTGTGTGCTGTGTGGGAAGAAGTTTAAGAGTGAGAAGCAATGGAAGAATCATGAGCAGTCTAAGAAGCATAAGGAGAAGGTTGCCGAGTTTAGGGATTCACTTGATGATGACATAGAAGAGCAGGTTGAAGAAGATTTAGAAGTGGAGGTAGAAGTAGAGGGATTGGAAAGTGAGGTGAATGGGATTGGGGCGAATGATGTTCGGTCGGGGGATGATGATGATTATGGGGTTGATGATTTGGAGGGGAGAGTTAGAGATGGTCTCAATGTTGCAGAGGAGAAGACTAGAAATGGAGTTGAGCTTGATGATGATGGCAGTGGTGGACTTTTTGATTCAAAGGAAGGGGAGGAGGCTGGTGTGTCGGTAGATTTGGATGGAGATGAGGAAATTGATGTTCTTGAAGCAATGGTGGCTGGGCACAACAGCCGAAAACCCAGTGCTTCAACTCAGGAACCCGAGGCTTCTTTCGTGATGGAATATGACAACCGAAAGGGCACAAGAAAGAAACGAGGATCCAAAAAAGAGAGGGGTAGGAAAAACTGGGAAGAATCTAATGCACCTGCCAATGGGGATCATGGGAATATGGACAATAAGGGAAATGATAATTCCTATGCAGAGGAGTCTACTTCACAACATTATGGCGAAAATGAGGGTAATAGTAAAGGAAATGAGCCTGTAGGTAAACATAAGAAGGTGTCAAGTGAACTAGCTGATAAAAAAGGAAATGCTAAGGATACAAAAACCAAAGCTAAAAGTTCATCCAAAGGAAGAAAAGGAAAGAATCTTGGCAATAGTTGTGACGCATGTGGAGAGGAGTTTGAGTCAAGGAATAAATTACATATGCATCTTGGAGAAACTGGGCATGCCACAATAAAAAGACGATAA 1782 0.4613 MAASTKRCHYEVLAVSRDSSPDEIRSAYRRLALQRHPDKLVQSGISQSEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDTDSVGSSVVPDLFSFFSNTVYNGYSDSGKGFYKVYSDVFDKIHANEINFAKKMGIGVDSVRQAPVMGNLESPYAQVTAFYSYWIGFATVMDFCWVDEYDVMAGPDRRTRRRMEEENNKARRKARKEYNDTVRKLADFVKKRDKRVIDMKVKKNAEMEKKKEEEREMKRRLEKEKKERAMKYEEPDWAKVNEDEVDDWVEELEEEEEEKKEEKEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFRDSLDDDIEEQVEEDLEVEVEVEGLESEVNGIGANDVRSGDDDDYGVDDLEGRVRDGLNVAEEKTRNGVELDDDGSGGLFDSKEGEEAGVSVDLDGDEEIDVLEAMVAGHNSRKPSASTQEPEASFVMEYDNRKGTRKKRGSKKERGRKNWEESNAPANGDHGNMDNKGNDNSYAEESTSQHYGENEGNSKGNEPVGKHKKVSSELADKKGNAKDTKTKAKSSSKGRKGKNLGNSCDACGEEFESRNKLHMHLGETGHATIKRR* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0123 593 SUPERFAMILY Chaperone J-domain 4 97 IPR036869 -
Lan1g0123 593 MobiDBLite consensus disorder prediction 521 551 - -
Lan1g0123 593 ProSiteProfiles Zinc finger C2H2 type domain profile. 298 327 IPR013087 -
Lan1g0123 593 Pfam DnaJ domain 9 74 IPR001623 -
Lan1g0123 593 ProSitePatterns Zinc finger C2H2 type domain signature. 565 587 IPR013087 -
Lan1g0123 593 SMART c2h2final6 298 322 IPR013087 -
Lan1g0123 593 SMART c2h2final6 563 587 IPR013087 -
Lan1g0123 593 ProSitePatterns Zinc finger C2H2 type domain signature. 300 322 IPR013087 -
Lan1g0123 593 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 1 593 IPR044648 -
Lan1g0123 593 SUPERFAMILY beta-beta-alpha zinc fingers 288 339 IPR036236 -
Lan1g0123 593 Gene3D DnaJ domain 1 89 IPR036869 -
Lan1g0123 593 ProSiteProfiles Zinc finger C2H2 type domain profile. 563 592 IPR013087 -
Lan1g0123 593 MobiDBLite consensus disorder prediction 377 419 - -
Lan1g0123 593 Coils Coil 193 213 - -
Lan1g0123 593 MobiDBLite consensus disorder prediction 494 517 - -
Lan1g0123 593 SMART ZnF_U1_5 295 329 IPR003604 GO:0003676|GO:0008270
Lan1g0123 593 MobiDBLite consensus disorder prediction 342 568 - -
Lan1g0123 593 SMART dnaj_3 7 69 IPR001623 -
Lan1g0123 593 CDD DnaJ 8 66 IPR001623 -
Lan1g0123 593 Pfam Zinc-finger double-stranded RNA-binding 298 323 IPR022755 -
Lan1g0123 593 PRINTS DnaJ domain signature 10 28 IPR001623 -
Lan1g0123 593 PRINTS DnaJ domain signature 28 43 IPR001623 -
Lan1g0123 593 PRINTS DnaJ domain signature 49 69 IPR001623 -
Lan1g0123 593 Coils Coil 230 264 - -
Lan1g0123 593 ProSiteProfiles dnaJ domain profile. 8 77 IPR001623 -
Lan1g0123 593 Gene3D Classic Zinc Finger 286 345 - -
Lan1g0123 593 Coils Coil 271 302 - -
Lan1g0123 593 ProSitePatterns Nt-dnaJ domain signature. 54 73 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0123 Lan-Chr1 917898 920488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0123 1 593 C2H2 Transcription Factor Family AT1G74250 49.770 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan1g0123 DnaJ 2.1e-21 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0123 K09506 - gmx:100788305 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1060 1 20795878 20798809 Lan1g0123 1 917898 920488 LSH