Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan1g0117 | ATGGAAGAAGATCAACAATTGATGAGACAACAACACATGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGTAGATCCTTAGGGGGTCACATAAGGTCTCATATCACAAAATTGTCATCATTATCAGCTGAAACAGAATACAAAGAAAAAGTTGGTAGCTATGGCTATGGTTTAAGGGAGAATCCGAAGAAGACATGGAGGATTTCAGATTCAACAAGTGAAGACACTTTACTTACTCTCACTACTGAAAGGTTTTGTAAAGAGTGTGGCAAAGGGTTTCACTCTTGGAAAGCCTTGTTTGGTCACATGAAATGTCACTCTAACAATGAAAAAGTTTCGAAAAGATCGGTGGAAGATCAAGATTCTGTGACTAACAACAATGCTAGCAGCAGCCACAATCAGAAGCTGGTCTTGCATATCCAATCTGATAATGAAGGAACTGCTCCAAGTAGGAGAAGAAGAAGATCAAAGAGAAGAAGAACAAGTTATATGGCTTGTGCTAATACCAATCCTTGTACTTTTTCACTTTCTGAGGTTGAGCATGAGCAAGAACAAGTTGCTATGAGCTTGGTCATGCTTAGTAGGGATTTAAGTCCTTGGAGTGGTGTTAATTCTGTTGTTGATTTCTCTGATATTAACTCTGCTTACTTTCAACCTTCATCTTCAGCTCAAACTAAAATTGAGAAAATGAAGAAGCCTATGCTCATTTGTTCTTCTGAGATTGCAAAAGTGATCAATGAAAGTGAGAAGCTGGAGTTTGTGAATTGTGTTTCTGGAAATCTTAACTCCAAAGGGAAAAGTTCAGAATCTTCGGCTACCGAGTTCATGAAGAGTAAGAAAGGTAAGAAGTGTGAGCTAGATTATGTGTCTGCATTGGAGAACTCTGAAGGTAACAGAGTCAATGAAACAGAATCAAATTTATCAAAGTCTACTATCACTAACAAGTACAGTTCAATCAAGACAAAGTTTTTTGATTCTGAATTGAAGCCAAAGTCGCTTAAGAATTGCGCCGACAAGCCTTCAGAAGCAGCTGAATTCAGCAAGAACACTCATAAAAGAGGCAAGTTTGAGTGTACAACTTGCACCAAAATCTTCCATTCTTACCAAGCACTAGGAGGCCATAGAGCTAATCACAAGAGGAACAAAAACTGCTTTGTTTCAAAGAATGAAAACAACATTGATCCAACAACTGGAAGCATGTTCATGAAGCATCTAGTTGAATCTGAAATACATGCTGGTTTTGATAATGAAGTGGCAGATACAATTACTGAGTCTAAGAAAATCAAAGTTCATGAGTGTCCAATTTGCTTGAAGATTTTTCAATCAGCACAAGCCTTGGTTGGTCACAAGAGATCTCATTTGGCAAGTGATTCTGAGTGTACTAAACACTTTCAAAAAGTGGTAGTACTTGAGGAACCAGTTCAAGAAATTAAGGAGTTTCTTGATCTCAATCTTCCTGCTGAAGAGGAAAGTACTAGCTATGCTGATTCTAACAGACCATGGTGGTTTGTAGAAAACAATCATAAGCAGGAGGCATTGATAGGCCTAATGTCTAGCTAA | 1560 | 0.3833 | MEEDQQLMRQQHMCKFCSKSFPCGRSLGGHIRSHITKLSSLSAETEYKEKVGSYGYGLRENPKKTWRISDSTSEDTLLTLTTERFCKECGKGFHSWKALFGHMKCHSNNEKVSKRSVEDQDSVTNNNASSSHNQKLVLHIQSDNEGTAPSRRRRRSKRRRTSYMACANTNPCTFSLSEVEHEQEQVAMSLVMLSRDLSPWSGVNSVVDFSDINSAYFQPSSSAQTKIEKMKKPMLICSSEIAKVINESEKLEFVNCVSGNLNSKGKSSESSATEFMKSKKGKKCELDYVSALENSEGNRVNETESNLSKSTITNKYSSIKTKFFDSELKPKSLKNCADKPSEAAEFSKNTHKRGKFECTTCTKIFHSYQALGGHRANHKRNKNCFVSKNENNIDPTTGSMFMKHLVESEIHAGFDNEVADTITESKKIKVHECPICLKIFQSAQALVGHKRSHLASDSECTKHFQKVVVLEEPVQEIKEFLDLNLPAEEESTSYADSNRPWWFVENNHKQEALIGLMSS* | 520 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan1g0117 | 519 | SUPERFAMILY | beta-beta-alpha zinc fingers | 11 | 106 | IPR036236 | - | |
| Lan1g0117 | 519 | Pfam | C2H2-type zinc finger | 430 | 455 | - | - | |
| Lan1g0117 | 519 | Pfam | C2H2-type zinc finger | 86 | 106 | - | - | |
| Lan1g0117 | 519 | Pfam | C2H2-type zinc finger | 12 | 34 | - | - | |
| Lan1g0117 | 519 | Pfam | C2H2-type zinc finger | 356 | 380 | - | - | |
| Lan1g0117 | 519 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 14 | 34 | IPR013087 | - | |
| Lan1g0117 | 519 | SUPERFAMILY | beta-beta-alpha zinc fingers | 356 | 453 | IPR036236 | - | |
| Lan1g0117 | 519 | MobiDBLite | consensus disorder prediction | 111 | 161 | - | - | |
| Lan1g0117 | 519 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 356 | 383 | IPR013087 | - | |
| Lan1g0117 | 519 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 431 | 458 | IPR013087 | - | |
| Lan1g0117 | 519 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 518 | - | - | |
| Lan1g0117 | 519 | Gene3D | Classic Zinc Finger | 353 | 453 | - | - | |
| Lan1g0117 | 519 | Gene3D | Classic Zinc Finger | 9 | 106 | - | - | |
| Lan1g0117 | 519 | MobiDBLite | consensus disorder prediction | 119 | 145 | - | - | |
| Lan1g0117 | 519 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 358 | 378 | IPR013087 | - | |
| Lan1g0117 | 519 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 84 | 111 | IPR013087 | - | |
| Lan1g0117 | 519 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 86 | 106 | IPR013087 | - | |
| Lan1g0117 | 519 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 433 | 453 | IPR013087 | - | |
| Lan1g0117 | 519 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 1 | 518 | - | - | |
| Lan1g0117 | 519 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 12 | 39 | IPR013087 | - | |
| Lan1g0117 | 519 | SMART | c2h2final6 | 12 | 34 | IPR013087 | - | |
| Lan1g0117 | 519 | SMART | c2h2final6 | 431 | 453 | IPR013087 | - | |
| Lan1g0117 | 519 | SMART | c2h2final6 | 356 | 378 | IPR013087 | - | |
| Lan1g0117 | 519 | SMART | c2h2final6 | 84 | 106 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan1g0117 | Lan-Chr1 | 870955 | 873347 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan1g0117 | 426 | 487 | C2H2 Transcription Factor Family | AT1G26610 | 46.774 | 1.68e-11 | 64.3 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Lan1g0117 | zf-C2H2_6 | 1e-08 | CL0361 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lan12g1233 | 12 | 18332417 | 18342957 | Lan1g0117 | 1 | 870955 | 873347 | LSH | |
| Lan1g1050 | 1 | 20732557 | 20734986 | Lan1g0117 | 1 | 870955 | 873347 | LSH |