LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan1g0106	ATGGGGTGTGTGTTTGTGAAACAAGGAGTGTCAGTGACCCCTGCAATTGATAACTCAGTTGAGTCAGATAGGAACAATAGCAATAACAAGAAGAAGAAGAAAAATAGGAGTGATGTGAGTGAGTCCTTGAGTTTCAGGTTGGGGAATCTGCATAAGTATGTTGAAGGGGAACAAGCCGCCGCAGGTTGGCCTGCTTGGCTTAGCACGGTCGCATCGGAAGCCATTCATGGTTGGGTGCCTCTACATGCTGATGCATATGAGAAACTTGAAAAGGTTGGGCAGGGTACATATAGCAGTGTTTTCCGGGCAAGGGAGCTTGAGACTGGGAAGATAGTGGCTCTGAAGAAGGTGAGGTTTGACAATTTTGAGCCAGAAAGTGTTAGGTTTATGGCGCGAGAGATAATGATTCTTCGAAGGCTTGATCATCCAAACATCATTAAATTGGAGGGCTTGATCACTTCCAGATTGTCTTGTAGCATATACCTCGTGTTTGAGTACATGCAGCATGACATCACAGGCCTCTTGTCTAGACCAGAAATCAAGTTTAGTGAACCACAGATTAAATGCTACATGAAACAGTTATTAAGTGGTCTTGAGCATTGTCACTCGCGGGGTGTAATGCACCGAGACATCAAAGGATCAAATCTTCTGGTGAATAATGAAGGGATTTTAAAGGTAGCAGATTTTGGATTGGCAAACTACTTCAACTATGGGAACAAGCAGCCGCTTACCAGCCGTGTTGTCACCTTGTGGTACCGCCCTCCCGAGCTTTTGCTCGGTTCAACAGATTACGGCCCACCTGTGGATCTCTGGAGTGTTGGCTGTGTATTTGCAGAGCTACTGCTTGGAAAGCCTATTCTTCAAGGGAGAACTGAGGTTGAACAATTGCACAAAATCTTCAAGCTTTGTGGCTCACCACCCGATGAATACTGGAAAAAGACCAGGCTTCCTCATGCAACTTTGTTCAAGCCACATCTACCATATGATAGTTGCCTCCAGGAGACATTTAAAGATTTGCCTGCAGCCACTGTAAATCTGCTACAAACTCTTCTTTCTGTTGAACCAAACAAACGCGGGACTGCCTCATCTGCTCTCTCATCTCAGTATTTCAAAACAAAGCCTTATGCATGTGATCCATCAAGCTTGCCAGAATACCCACCTAGCAAGGAGATCGATGCAAAACCGCAGGAGGAATCAAAAAGGAAAAAGATCGGTGGGCGAGTTTGTGGACACGAAACAAGAAAACCATCAAGAAAGCCATTAGGAGCAGGACTCAGTAAATTAGCCCCAGCAGAGGATTTGACAAGTCAAACTCAAACTTCACAAAAGGTTGATGATAGATCTATCCACATCCTTAAAGATGGAAAATCTAACATAGGTAATGAGGCACCAAAGCCATGTAATAGTAAAGCAGAAGGTGCTTCCAATTTGAAGAATGTGTCTCAAGTAGATATTCACAACATTTCCTTTCCTGCACAATTGCAAGTTTCAAAATCAAGTGGCTTTGCTTGGGCAAAAAGGCATAAAGATGACAATTCAGTTAGATCACATCGCCGAACTATTTCTAGAGGGCATATATTTAACTCATTAGAAACTTGCACACTAAATTCAAGGAATGATTCTGACTCCAGAAACCATGAAAATAAGGAATTTTGTGGGGAACGCACTAACTCTAGGGGTCATGATATGCTTGAAATATCTAACCTTGCAATGCAAAACCAATGGAGTAAGTTTGATCGTCCAGATTCATTTGATACTTCTGATGAGTATCATTCACAAGAACTATCTATGGCGCTTTATCGTAGAGATGATTCGTTATCCAAGAGAAGTAGCCAGAGTTATCAAGATCAAGCAGAAAAGGTGGAATACTCAGGACCCCTACTATCTCAAATGCACACAGTTGATGAGCTCTTAGAAAAACATGAGCATCACATCCGGCGTATTGTCAGAAGATCATGGTTTCAGAAAGGTAAGAAGCATGGGAAGTAA	1989	0.4274	MGCVFVKQGVSVTPAIDNSVESDRNNSNNKKKKKNRSDVSESLSFRLGNLHKYVEGEQAAAGWPAWLSTVASEAIHGWVPLHADAYEKLEKVGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMQHDITGLLSRPEIKFSEPQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANYFNYGNKQPLTSRVVTLWYRPPELLLGSTDYGPPVDLWSVGCVFAELLLGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPHLPYDSCLQETFKDLPAATVNLLQTLLSVEPNKRGTASSALSSQYFKTKPYACDPSSLPEYPPSKEIDAKPQEESKRKKIGGRVCGHETRKPSRKPLGAGLSKLAPAEDLTSQTQTSQKVDDRSIHILKDGKSNIGNEAPKPCNSKAEGASNLKNVSQVDIHNISFPAQLQVSKSSGFAWAKRHKDDNSVRSHRRTISRGHIFNSLETCTLNSRNDSDSRNHENKEFCGERTNSRGHDMLEISNLAMQNQWSKFDRPDSFDTSDEYHSQELSMALYRRDDSLSKRSSQSYQDQAEKVEYSGPLLSQMHTVDELLEKHEHHIRRIVRRSWFQKGKKHGK*	663

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan1g0106	662	ProSitePatterns	Protein kinases ATP-binding region signature.	92	115	IPR017441	GO:0005524
	Lan1g0106	662	Pfam	Protein kinase domain	86	370	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan1g0106	662	SMART	serkin_6	86	370	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan1g0106	662	MobiDBLite	consensus disorder prediction	16	38	-	-
	Lan1g0106	662	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	206	218	IPR008271	GO:0004672\|GO:0006468
	Lan1g0106	662	MobiDBLite	consensus disorder prediction	535	556	-	-
	Lan1g0106	662	Gene3D	Transferase(Phosphotransferase) domain 1	169	409	-	-
	Lan1g0106	662	MobiDBLite	consensus disorder prediction	390	418	-	-
	Lan1g0106	662	ProSiteProfiles	Protein kinase domain profile.	86	370	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan1g0106	662	CDD	STKc_CDK9_like	86	370	-	-
	Lan1g0106	662	MobiDBLite	consensus disorder prediction	431	445	-	-
	Lan1g0106	662	PANTHER	BINDING PROTEIN, PUTATIVE-RELATED	37	655	-	-
	Lan1g0106	662	Gene3D	Phosphorylase Kinase; domain 1	73	168	-	-
	Lan1g0106	662	MobiDBLite	consensus disorder prediction	24	38	-	-
	Lan1g0106	662	MobiDBLite	consensus disorder prediction	601	620	-	-
	Lan1g0106	662	MobiDBLite	consensus disorder prediction	540	556	-	-
	Lan1g0106	662	MobiDBLite	consensus disorder prediction	380	447	-	-
	Lan1g0106	662	PANTHER	CELL DIVISION PROTEIN KINASE	37	655	-	-
	Lan1g0106	662	SUPERFAMILY	Protein kinase-like (PK-like)	79	377	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan1g0106	Lan-Chr1	805215	809635	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan1g0106	78	402	Core Cell Cycle Gene Families	AT5G10270	49.853	3.17e-111	342

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Lan1g0106		Pkinase	2.7e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan1g0106	-		-	gmx:100784406	1075.08