Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0100 ATGGAAAACGTTTCAGCTATGTATAATAAGAAAGAGGATCAGATGGATTTGCCACCCGGGTTTCGGTTTCATCCTACTGATGAAGAGCTTATAAGCCAATATCTTTACAAGAAGGTTACTGATTCCAAGTTCACTGCAAGGGCAATTGGAGAAGTGGACTTGAATAGGTGTGAGCCATGGGATTTACCATGGAAAGCCAAGATGGGAGAAAAAGAGTGGTACTTTTTCTGTGTGAGGGATAGAAAATACCCAACTGGGTTAAGGACCAACAGAGCCACTGAAGCAGGGTACTGGAAAGCCACAGGGAAAGACAAGGAGATTTTCAAAGGAAAATCATTGGTTGGTATGAAGAAAACTCTGGTTTTTTATAAAGGAAGAGCACCCAAAGGAGAGAAAAGTAACTGGGTCATGCATGAATATAGGCTTGAAGGAAAATTCACTGTTAACTACCTCCCCAAAACTGCAAAGAATGAGTGGGTTATTTGTAGGGTTTTTCAGAAGAGTTCATCTGGGAAGAAAATTCATATTTCTGGGATAATGAGGTTGGACTCTTATGGAAATAAATTGGGTTGTTCTGTTCTACCACCCAAAACAATGAATGATTCTGCTTACGTGCCCTGCTTCTCCAATCTTATTGATAATGTTCAAAGAAACAACATCAACAACAACAACAACCAAGGAGGGATCTATGATCCCTTCACCTTCCCCGTTTACGCCGGTTTATCGAATCCATTACAAATCCCTCTTCCAAGAGTACCACCTCCACCACCATCCACAGTCACTGCCTCATTCTACACCTCTACTCAAGGTCCAACAAATTTACCATTACCTGGTTCTGTTTACAACATGCAGGACCAGACTAGCTTTTATGACAACAACAATGGATCAAACAACATGATGAATGGTTTCAAGACAGATAGGGAAATGATTGGTGTCTCAAACAACAATGGACCAAACAACATGATGAATGGTTGTTTTAAGACAGATAGGGAAATCTCACAGGAAACATGTCCCACTACTGATATGAATGCTGCAACTTCTTCTGTAGTCTCAAATTTTGATATGTGTAGAAGGCCCTTTCACAATCAGAATCAGCATCACCCTCCTCCTCCTACTACTACTTCTGCTGCACCAATGGACCTTGATGGCTTATGGAATTACTAA 1164 0.4089 MENVSAMYNKKEDQMDLPPGFRFHPTDEELISQYLYKKVTDSKFTARAIGEVDLNRCEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFKGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFTVNYLPKTAKNEWVICRVFQKSSSGKKIHISGIMRLDSYGNKLGCSVLPPKTMNDSAYVPCFSNLIDNVQRNNINNNNNQGGIYDPFTFPVYAGLSNPLQIPLPRVPPPPPSTVTASFYTSTQGPTNLPLPGSVYNMQDQTSFYDNNNGSNNMMNGFKTDREMIGVSNNNGPNNMMNGCFKTDREISQETCPTTDMNAATSSVVSNFDMCRRPFHNQNQHHPPPPTTTSAAPMDLDGLWNY* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0100 387 MobiDBLite consensus disorder prediction 359 387 - -
Lan1g0100 387 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
Lan1g0100 387 SUPERFAMILY NAC domain 6 167 IPR036093 GO:0003677|GO:0006355
Lan1g0100 387 ProSiteProfiles NAC domain profile. 17 167 IPR003441 GO:0003677|GO:0006355
Lan1g0100 387 Gene3D NAC domain 26 172 IPR036093 GO:0003677|GO:0006355
Lan1g0100 387 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 382 - -
Lan1g0100 387 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 5 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0100 Lan-Chr1 756421 758184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0100 15 387 NAC Transcription Factor Family AT5G07680 49.215 5.44e-110 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lan1g0100 NAM 1.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0100 - - lja:Lj0g3v0155359.1 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1041 1 20684076 20686286 Lan1g0100 1 756421 758184 LSH