Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0098 ATGGGAAGAGTTAAACTAAAGATAAAGAAATTAGAGAGCACAAGCAACAGGCAAGTTACTTATTCTAAACGCAAAAGTGGAATTTTGAAGAAAGCTAAGGAATTATCGATACTATGTGATATACCTATTGCTCTTCTTATGTTTTCACCAACTGGGAAACCAACATTGCTTCAAGGAGAGCGAAGCAATTTTGAGGAGGTCATTACAAAATTTGCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAATTGGAAAGCCTTGAAGTTCTGAAGAAAACCTTCAAGAAGTTGGATCATGATGTAAAAATACAAGATTTTTTGGGTTCAAGCAGTCAAACAGTGGAGGAATTAACTCATCAAGTGAGGGTTCTACAAACTCAGCTTTCAGAAGTACATCAAAGACTGAGCTATTGGAGTAATCTTGACAAGATTAATAACTTGGAACATCTTCGGCAAATGGAAGACTCGTTAAGGGAATCCATCAATCGAGTGTGTCTACAGAAGGATAATTTAGGAAAGCACCAACTAATTCCACTTAATTGTGCTAACCAGTTACAGGAAGGGATGAATTTACCCATGATGATGGCTGGTCTGCAAGAGTCCCAACCCCTGTCTTGGCTTTTGAATAATGATAACCATCACCAGTTGATGTTACCCAACGAACCAAAATTTCTAGCATTTAGCGATAATACCAATAGAGATGCTGAGTGCTCCACTAACATTTCACTCCCAGGCTATTCTGGTTATAATATTGGCAATGGCAAACTTGAGGTTGGAAGCTCTCCCCAGGTCACGACTTTGGGTCATGGAGGTTGTGCCATGAATGAGTTAAATGGAACTGCTTCCTTAAATGTTCAACATTGTGAGCAGTTTGCATACCCTCCTCATCCACCGGATAATGAGGAAATGAAACATCACCATGCAATAAACAGTAAACCAAATACTATGGATTACCAAGTTCATAATAACTTTGATCTGCCTAGATCACTGTTTGAAAATGGACATCAGTGCTGGAATTCTGGCTCTGGGCCTTGTGGGGTTGCTATGTATAATGAAAACGGCTTCCATAGGTAA 1074 0.3948 MGRVKLKIKKLESTSNRQVTYSKRKSGILKKAKELSILCDIPIALLMFSPTGKPTLLQGERSNFEEVITKFAQLSPQERAKRKLESLEVLKKTFKKLDHDVKIQDFLGSSSQTVEELTHQVRVLQTQLSEVHQRLSYWSNLDKINNLEHLRQMEDSLRESINRVCLQKDNLGKHQLIPLNCANQLQEGMNLPMMMAGLQESQPLSWLLNNDNHHQLMLPNEPKFLAFSDNTNRDAECSTNISLPGYSGYNIGNGKLEVGSSPQVTTLGHGGCAMNELNGTASLNVQHCEQFAYPPHPPDNEEMKHHHAINSKPNTMDYQVHNNFDLPRSLFENGHQCWNSGSGPCGVAMYNENGFHR* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0098 357 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 356 - -
Lan1g0098 357 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan1g0098 357 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan1g0098 357 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan1g0098 357 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Lan1g0098 357 Coils Coil 114 134 - -
Lan1g0098 357 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 1 356 - -
Lan1g0098 357 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan1g0098 357 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
Lan1g0098 357 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Lan1g0098 357 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0098 Lan-Chr1 737961 742365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0098 1 307 Type I MADS-box Gene Family AT2G03060 46.319 9.21e-84 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan1g0098 SRF-TF 5.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0098 - - lang:109362237 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1245 12 18413018 18416761 Lan1g0098 1 737961 742365 LSH