Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lan1g0098 | ATGGGAAGAGTTAAACTAAAGATAAAGAAATTAGAGAGCACAAGCAACAGGCAAGTTACTTATTCTAAACGCAAAAGTGGAATTTTGAAGAAAGCTAAGGAATTATCGATACTATGTGATATACCTATTGCTCTTCTTATGTTTTCACCAACTGGGAAACCAACATTGCTTCAAGGAGAGCGAAGCAATTTTGAGGAGGTCATTACAAAATTTGCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAATTGGAAAGCCTTGAAGTTCTGAAGAAAACCTTCAAGAAGTTGGATCATGATGTAAAAATACAAGATTTTTTGGGTTCAAGCAGTCAAACAGTGGAGGAATTAACTCATCAAGTGAGGGTTCTACAAACTCAGCTTTCAGAAGTACATCAAAGACTGAGCTATTGGAGTAATCTTGACAAGATTAATAACTTGGAACATCTTCGGCAAATGGAAGACTCGTTAAGGGAATCCATCAATCGAGTGTGTCTACAGAAGGATAATTTAGGAAAGCACCAACTAATTCCACTTAATTGTGCTAACCAGTTACAGGAAGGGATGAATTTACCCATGATGATGGCTGGTCTGCAAGAGTCCCAACCCCTGTCTTGGCTTTTGAATAATGATAACCATCACCAGTTGATGTTACCCAACGAACCAAAATTTCTAGCATTTAGCGATAATACCAATAGAGATGCTGAGTGCTCCACTAACATTTCACTCCCAGGCTATTCTGGTTATAATATTGGCAATGGCAAACTTGAGGTTGGAAGCTCTCCCCAGGTCACGACTTTGGGTCATGGAGGTTGTGCCATGAATGAGTTAAATGGAACTGCTTCCTTAAATGTTCAACATTGTGAGCAGTTTGCATACCCTCCTCATCCACCGGATAATGAGGAAATGAAACATCACCATGCAATAAACAGTAAACCAAATACTATGGATTACCAAGTTCATAATAACTTTGATCTGCCTAGATCACTGTTTGAAAATGGACATCAGTGCTGGAATTCTGGCTCTGGGCCTTGTGGGGTTGCTATGTATAATGAAAACGGCTTCCATAGGTAA | 1074 | 0.3948 | MGRVKLKIKKLESTSNRQVTYSKRKSGILKKAKELSILCDIPIALLMFSPTGKPTLLQGERSNFEEVITKFAQLSPQERAKRKLESLEVLKKTFKKLDHDVKIQDFLGSSSQTVEELTHQVRVLQTQLSEVHQRLSYWSNLDKINNLEHLRQMEDSLRESINRVCLQKDNLGKHQLIPLNCANQLQEGMNLPMMMAGLQESQPLSWLLNNDNHHQLMLPNEPKFLAFSDNTNRDAECSTNISLPGYSGYNIGNGKLEVGSSPQVTTLGHGGCAMNELNGTASLNVQHCEQFAYPPHPPDNEEMKHHHAINSKPNTMDYQVHNNFDLPRSLFENGHQCWNSGSGPCGVAMYNENGFHR* | 358 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lan1g0098 | 357 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 356 | - | - | |
Lan1g0098 | 357 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Lan1g0098 | 357 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Lan1g0098 | 357 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Lan1g0098 | 357 | ProSiteProfiles | MADS-box domain profile. | 1 | 53 | IPR002100 | GO:0003677|GO:0046983 | |
Lan1g0098 | 357 | Coils | Coil | 114 | 134 | - | - | |
Lan1g0098 | 357 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 | 1 | 356 | - | - | |
Lan1g0098 | 357 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Lan1g0098 | 357 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 55 | IPR002100 | GO:0003677|GO:0046983 | |
Lan1g0098 | 357 | Gene3D | - | 14 | 96 | IPR036879 | GO:0003677|GO:0046983 | |
Lan1g0098 | 357 | SUPERFAMILY | SRF-like | 2 | 95 | IPR036879 | GO:0003677|GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lan1g0098 | Lan-Chr1 | 737961 | 742365 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lan1g0098 | 1 | 307 | Type I MADS-box Gene Family | AT2G03060 | 46.319 | 9.21e-84 | 257 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-M-type | Lan1g0098 | SRF-TF | 5.8e-20 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lan1g0098 | - | - | lang:109362237 | 685.641 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lan12g1245 | 12 | 18413018 | 18416761 | Lan1g0098 | 1 | 737961 | 742365 | LSH |