Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0091 ATGATCATGGAGTCTCCACCACTTATGTTTTGGCAATCTAACTTTGAACTAGACCAAAACCCATCTCAATTTACGTCCCAATTTTCTTCATATGATCAATACACATGCGGAAATGTTAATGGGTGTGTTTCACAAGATAATTGGCCACTCGAATTTCCCTTGCAAGATAACCATCTTGACGCTGTTCCATTTATGGAGTCTTTTTTCTCTCCTAATCTTTTATATGACTTTCCCACAATTGAACCAATATCAACTGCACCAGTACAAGATTCTGAATTTTATGATATCAGAAAAGGGTTTTCTGTCTGGAATGATATTGATGCTGAATTTGAAAAGGAAGAGGTTTTTTTCTTTTGCAACAAAGAGGAAAGTGGAAATGAAGTGACAGAAGATATTAACTTTGGGAATGGCAAGAAAGTTAGAGAAGAAAGAAGTGGCAGCACTAGAATGTTATCAAGGAAGACAATATCTCAATACTTCTACATGCCTATAACACAAGCTGCTAGAGAGCTTAACGTAGGGCTTACACTTCTGAAGAAAAGGTGTAGGGAATTGGGTATTAGAAGGTGGCCTCACAGAAAGTTGATGAGCCTTCAAACTCTAATAAATAATGTGCAGGAACTAGGGAAAGAGGAGGGGGCAGAAAGTGATATGAAGTTAAGGAATGCGATTGAGATATTGGAGAAGGAAAAGAAGATGTTGGAAGAAACACCAGATATGCAACTAGAAGATAATACAAAAAAACTTAGACAAGCGTGTTTTAAGGCAAGCTACAAGAAGAGAAAACTTATGGGAATGATGGAATCACAATCTTCTTTTTCTACCCTCAGTGGTCATGTAACAAATATTGACATATTTTAG 861 0.3682 MIMESPPLMFWQSNFELDQNPSQFTSQFSSYDQYTCGNVNGCVSQDNWPLEFPLQDNHLDAVPFMESFFSPNLLYDFPTIEPISTAPVQDSEFYDIRKGFSVWNDIDAEFEKEEVFFFCNKEESGNEVTEDINFGNGKKVREERSGSTRMLSRKTISQYFYMPITQAARELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLINNVQELGKEEGAESDMKLRNAIEILEKEKKMLEETPDMQLEDNTKKLRQACFKASYKKRKLMGMMESQSSFSTLSGHVTNIDIF* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0091 286 PANTHER PROTEIN RKD1-RELATED 48 272 - -
Lan1g0091 286 Coils Coil 217 237 - -
Lan1g0091 286 ProSiteProfiles RWP-RK domain profile. 132 218 IPR003035 -
Lan1g0091 286 Pfam RWP-RK domain 151 198 IPR003035 -
Lan1g0091 286 PANTHER PROTEIN RKD4 48 272 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0091 Lan-Chr1 711007 712424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0091 52 266 AtRKD Transcription Factor Family AT1G18790 50.000 2.54e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lan1g0091 RWP-RK 4.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0091 - - gmx:100788666 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1248 12 18430086 18431215 Lan1g0091 1 711007 712424 LSH
Lan1g1037 1 20660213 20661940 Lan1g0091 1 711007 712424 LSH