Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0087 ATGGAAGGAGGTGATGATGATCTCCACCACCACCACCATCAGCATCAACAGCACCACCGTCAAAACTTCCCATTCCAACTTCTTGAGAAAAAGGAAGATCAAGAAGCAGCATCATGCTCCACCTCATCCCCATACCCAACCCTAGCAATCTCACCAACAGAACCTAGTACTTCCAATTCAAACCGATCCAACCAACTTGTTGCAACTCCATCCACCAACACCTCCACAGAACTCTCAAAGAAACCACCGCCAAAGCGAGCCTCCACCAAGGACCGCCACACCAAGGTGGACGGCCGTGGACGCCGCATCCGAATGCCGGCACTGTGCGCCGCTAGAGTTTTCCAGCTTACCCGCGAGCTCGGGCATAAGTCCGACGGCGAAACCATCGAGTGGCTCCTCCAGCAGGCGGAACCCTCCGTCATCGCCGCAACCGGAACGGGCACCATCCCTGCGAACTTCACCTCCCTCAACATCTCTCTGAGAAGCTCAGGGTCCACCTTGTCGGTGCCATCTCAGCTTAGATCCTCGTACTTCAACCCAAACTTCTCGGTTCAACAACAACGTAGGACCTTGTTTCCCGGAATAGGGTTATCTTCAGATAACAACAACAGCAACAACAACACATCAACGCTTCTGAATTTCCAACAGTCCAATAACCTATCCATGTTTCAAGCGAAGCAAGAACTTCGAGACGGTGGTGGGGGTGGGGGTCAATCTTCTTCAACGACGCTGGATTTGTCTGATACAAACACGGTTGAAGGGTTAGGAAGAAAAAGAAGACCAATTGAGCAAGACCTTTCTTCAGCGCAGCATCAAATGGGAAGTTATCTGCTGCAGTCGAGTGCAGGTGCTATTCCGGCAAGTCACGCTCAGATTCCAGCGAACATATGGATGGTGGCTCAAGCTGCAGCGAATTCAAATAACCAGGTTATGAGTCATGGTGACCCTATATGGACATTTCCACAAGTGAATAATAATGCTGCTATGTATAGAGGCACTGTTTCTAGTGGCTTGCACTTTATGAACTATCCTACACCCATGGCCTTGTTGCCAGGTCAACAACAATTAGGTTCATCTGCTGCTGGTGGTGGTGGTGGTGGTAATATAAATATGAATGAAGGGCATTTGAGTATGCTTGCTGGACTTAGCCCTTATCGGACGGTGATCGGCGTTTCTGAGTCTCAGGCAAGTGGGTCTCAATCTCATCGTGGTGGTAGTGATGATCGCCATGATTCCACAAGTCATCACTCTTAA 1254 0.4984 MEGGDDDLHHHHHQHQQHHRQNFPFQLLEKKEDQEAASCSTSSPYPTLAISPTEPSTSNSNRSNQLVATPSTNTSTELSKKPPPKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSTLSVPSQLRSSYFNPNFSVQQQRRTLFPGIGLSSDNNNSNNNTSTLLNFQQSNNLSMFQAKQELRDGGGGGGQSSSTTLDLSDTNTVEGLGRKRRPIEQDLSSAQHQMGSYLLQSSAGAIPASHAQIPANIWMVAQAAANSNNQVMSHGDPIWTFPQVNNNAAMYRGTVSSGLHFMNYPTPMALLPGQQQLGSSAAGGGGGGNINMNEGHLSMLAGLSPYRTVIGVSESQASGSQSHRGGSDDRHDSTSHHS* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0087 417 MobiDBLite consensus disorder prediction 393 417 - -
Lan1g0087 417 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 11 416 IPR005333 GO:0003700
Lan1g0087 417 MobiDBLite consensus disorder prediction 37 82 - -
Lan1g0087 417 ProSiteProfiles TCP domain profile. 89 143 IPR017887 -
Lan1g0087 417 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 11 416 - -
Lan1g0087 417 MobiDBLite consensus disorder prediction 403 417 - -
Lan1g0087 417 MobiDBLite consensus disorder prediction 234 250 - -
Lan1g0087 417 MobiDBLite consensus disorder prediction 228 260 - -
Lan1g0087 417 MobiDBLite consensus disorder prediction 83 98 - -
Lan1g0087 417 Pfam TCP family transcription factor 88 216 IPR017887 -
Lan1g0087 417 MobiDBLite consensus disorder prediction 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0087 Lan-Chr1 674200 676474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0087 79 409 TCP Transcription Factor Family AT3G47620 43.510 6.98e-66 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lan1g0087 TCP 3.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0087 - - cam:101512124 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1255 12 18480616 18482324 Lan1g0087 1 674200 676474 LSH
Lan1g1034 1 20636638 20638290 Lan1g0087 1 674200 676474 LSH