Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0086 ATGGGTTCGGAGAGTGCTGCTCCTATGGTTGAGAAATCAATAAACAGATCTTCTCCTGGTAAAAAGAAACAAGGTAAAGTCCCGAAGAGAATTCACAAGTCTGAAATGGAGAAAATGAAGCGCGAACATTTGAATGAACTCTTTCTTGATCTTGCCAACACACTTGACCTAAACGAGCAGAACACTGGAAAGGCTTCTATATTGTGTGAAACTGCTAGACTACTACAGGATTTGGTCTGTCAGATAGAGTCCCTCAAGAAGGAAAACGTTTCTCTGTTATCTGAATCTCATTATGTAGCAATGGAGAAAAATGAGCTGAAGGAGGAGAATTCTGGTTTAGAAACTCAAATTGAGAAGCTTCTTAGTGAGATACAAGCAAAAGTGGCTCAGTCTAAACCTGACCTGAATGCACCCCCTAGTTTGGAACTTGAGCTGCCAACACAGACAAATTATCCAGGGCAGAGTCTCCAATTGCCTTCTATAGACCCTATCTTGCAGCAAGGACCTGCTATTTTGGTTGTTCCCTTTCGTCCCGACCTTCAAGCAGCATTTTCAGCTCCTAATGTTGCTGAGATTGCGCCAAAGCCTTCATCCGTTGTGAGCAAACCACATGCAAGGTATCCCACACCAGCAGATTCATGGCCATCCCAGCTTCTTGGATAG 663 0.4359 MGSESAAPMVEKSINRSSPGKKKQGKVPKRIHKSEMEKMKREHLNELFLDLANTLDLNEQNTGKASILCETARLLQDLVCQIESLKKENVSLLSESHYVAMEKNELKEENSGLETQIEKLLSEIQAKVAQSKPDLNAPPSLELELPTQTNYPGQSLQLPSIDPILQQGPAILVVPFRPDLQAAFSAPNVAEIAPKPSSVVSKPHARYPTPADSWPSQLLG* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0086 220 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 28 78 IPR011598 GO:0046983
Lan1g0086 220 Coils Coil 75 95 - -
Lan1g0086 220 Coils Coil 103 130 - -
Lan1g0086 220 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 26 93 IPR036638 GO:0046983
Lan1g0086 220 Gene3D - 25 102 IPR036638 GO:0046983
Lan1g0086 220 PANTHER TRANSCRIPTION FACTOR BHLH47 5 219 - -
Lan1g0086 220 MobiDBLite consensus disorder prediction 1 32 - -
Lan1g0086 220 PANTHER TRANSCRIPTION FACTOR BHLH47 5 219 - -
Lan1g0086 220 MobiDBLite consensus disorder prediction 198 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0086 Lan-Chr1 665408 667769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0086 15 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 50.442 1.53e-60 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0086 - - mtr:MTR_4g108360 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1256 12 18486114 18488483 Lan1g0086 1 665408 667769 LSH