Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0084 ATGTCTAACAGAAGGTCAAGGTCAAGTAATATGATCACTGAGGATCAGATCAATGACCTTGTCTCCAAGTTACAACAGCTTCTTCCTGAGATTCGCCATAGCCATAGGCATTCTGATAAGGTGTCATCTGCGAAGATATTGCAAGAGACATGCAACTATATTAGAAGCTTACACAGAGAAGTGGACGATCTAAGTGAGCGTTTGTCTGAGTTGTTGGCAAATACTGACACTGCTCAAGCTTCAATCATTAGAAATCTACTTCTGCAACAATAA 273 0.4029 MSNRRSRSSNMITEDQINDLVSKLQQLLPEIRHSHRHSDKVSSAKILQETCNYIRSLHREVDDLSERLSELLANTDTAQASIIRNLLLQQ* 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0084 90 Pfam Helix-loop-helix DNA-binding domain 15 58 IPR011598 GO:0046983
Lan1g0084 90 CDD bHLH_AtPRE_like 8 74 - -
Lan1g0084 90 PANTHER TRANSCRIPTION FACTOR PRE 1 87 IPR044293 GO:0006355|GO:0040008|GO:0046983
Lan1g0084 90 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 76 IPR036638 GO:0046983
Lan1g0084 90 Coils Coil 54 74 - -
Lan1g0084 90 SMART finulus 10 63 IPR011598 GO:0046983
Lan1g0084 90 Gene3D - 4 85 IPR036638 GO:0046983
Lan1g0084 90 PANTHER TRANSCRIPTION FACTOR PRE3 1 87 - -
Lan1g0084 90 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 57 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0084 Lan-Chr1 659134 659772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0084 12 89 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 78.205 1.90e-38 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan1g0084 HLH 7.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0084 - - csv:101219790 133.265