Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0049 ATGGTGGACAACGTTGGAGGAAGTTGCTCTAATGAAGATGGTGGAGGGATGAAGGAACAAGACAGGTTGTTGCCAATAGCGAATGTTGGTCGGATAATGAAGCAGATATTGCCTCAGAATGCAAAAATATCGAAGGAAGCGAAGGAAACAATGCAAGAATGTGTGTCAGAGTTCATAGGGTTTGTAACAAGTGAGGCATCAGAAAGATGCAGAAAAGAAAGGAGAAAGACTGTGAATGGAGATGATATATGTTGGGCCTTGGGGACACTTGGTTTTGATGATTATGCAGAACCAATGAGAAGGTACTTGCATAGATATAGAGAGTTAGAAGTTGATAGAACAATTAATCAAGAAAGAGGAAATAGCCCTCAAAGACAAGGATAA 384 0.4036 MVDNVGGSCSNEDGGGMKEQDRLLPIANVGRIMKQILPQNAKISKEAKETMQECVSEFIGFVTSEASERCRKERRKTVNGDDICWALGTLGFDDYAEPMRRYLHRYRELEVDRTINQERGNSPQRQG* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0049 127 SUPERFAMILY Histone-fold 20 114 IPR009072 GO:0046982
Lan1g0049 127 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Lan1g0049 127 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Lan1g0049 127 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Lan1g0049 127 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Lan1g0049 127 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 121 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lan1g0049 127 Gene3D Histone, subunit A 13 127 IPR009072 GO:0046982
Lan1g0049 127 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0049 Lan-Chr1 276116 276570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0049 17 120 CCAAT-HAP3 Transcription Factor Family AT2G47810 73.077 8.72e-56 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lan1g0049 CBFD_NFYB_HMF 3.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0049 K08065 - gmx:100786046 209.534