Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0046 ATGGAACGGTACGGACGCTCCAGCGACGAGGGATACCAAGAGTCATCATGGCAAGGTAGTGGATCGTACCCTCAGCGACCCGGTGAGGCTGATTGTATCTACTTTCTTAAGAACGGATTTTGTGGCTATGCCTCTCGATGTCGCTTCAATCATCCTCGTGATCGCGCTCGAGTAGTTACTGGAGCTGCAAGGTCTGGATCAGGGGAGCATCCGGAACGAGTTGGTCAGCATGTGTGCCAATATTATATGAGGACGGGATCATGCAAATTTGGTTCTTCCTGCAAGTACCACCATACCAGGCAGGAAGCAGGCATTGCTGCCCCTGTGTCACTAAATTATTATGGATATCCATTGCGAACGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACGGGACAATGCAAGTTTGGTACCACCTGTAAATTCCATCATCCACAGCCAGTGGGCGTCCAAATTACAGCGCCACCACCAGTTCCCCCACTTTCACCTATGCCTGTACCTTCCCCATTATATCCAAATGTACAGCCCCCTTCTGGTTCCTCATCACAACAATACGGTGTAGTGGTTGCAAGACCACCTTTGCTATCTGGCTCACTAGTTCAGGGCCCCTATGGGCCTATAGTAGTGTCCCCTACCATGGTTCCTTTTTCTGGCTGGGGTCCTTATCAGGATCCTGCGACAAGCCCAGTATTTCCTTCTACTACTCTATCTAATGTTGGTTCAACACAATTTTATGGGATAATGCAGCTCCCTTCACCACAAACTGCATATGCTGGGCCTTATCAGCCTTCTGGTTCCTTAATTGGTCCTTCTGGCAGTAGTCAGAAGGAGAACTCATTGCCAGAAAGGCCTGATCAACCTGAATGTCAGTATTACCTTAAAACAGGGGATTGTAAATTTGGTCCATCATGTAGATATCATCATCCAGCAGATATGAGTGCTTCAAAAGCGAATGTGATCCTTAGTCCTATGGGTCTTCCGTTGCGCCCGGGGGCATCAGTTTGCACTCATTATACCCAACACGGAGTTTGTAAGTTTGGTCCTGCATGCAAATTTGATCATCCTATGGGATCACTGAGTTATAGTCCTTCTGCTTCTTCCCTTGCTGACATGCCAGTTGCACCCTATCCTGTGGGTTCCTCCTTTGGTGCTCTTGCTCCGTCATCTTCATCATCAGAGTTACGGCCTGAACTTGTCTCAGGATCCAGCAATGAGCCTGCTTCATCCAGAATGTCTTCATCAATGAGCACATCAACTGGATCAGTTGGCTTGACCTCGTCAACGGGTGGACCAATTTCTCATTCAGGCACCCAACCATCTGTTCAGAATTCAAGTTCTTTAGCAACTATCGATGCCACCAATAGTACCACTGTCTCTTACACCTCAAGCTAA 1392 0.4777 MERYGRSSDEGYQESSWQGSGSYPQRPGEADCIYFLKNGFCGYASRCRFNHPRDRARVVTGAARSGSGEHPERVGQHVCQYYMRTGSCKFGSSCKYHHTRQEAGIAAPVSLNYYGYPLRTGEKECSYYVKTGQCKFGTTCKFHHPQPVGVQITAPPPVPPLSPMPVPSPLYPNVQPPSGSSSQQYGVVVARPPLLSGSLVQGPYGPIVVSPTMVPFSGWGPYQDPATSPVFPSTTLSNVGSTQFYGIMQLPSPQTAYAGPYQPSGSLIGPSGSSQKENSLPERPDQPECQYYLKTGDCKFGPSCRYHHPADMSASKANVILSPMGLPLRPGASVCTHYTQHGVCKFGPACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSFGALAPSSSSSELRPELVSGSSNEPASSRMSSSMSTSTGSVGLTSSTGGPISHSGTQPSVQNSSSLATIDATNSTTVSYTSS* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0046 463 ProSiteProfiles Zinc finger C3H1-type profile. 78 101 IPR000571 GO:0046872
Lan1g0046 463 MobiDBLite consensus disorder prediction 1 25 - -
Lan1g0046 463 ProSiteProfiles Zinc finger C3H1-type profile. 329 357 IPR000571 GO:0046872
Lan1g0046 463 ProSiteProfiles Zinc finger C3H1-type profile. 119 147 IPR000571 GO:0046872
Lan1g0046 463 SUPERFAMILY CCCH zinc finger 30 57 IPR036855 GO:0046872
Lan1g0046 463 SUPERFAMILY CCCH zinc finger 121 146 IPR036855 GO:0046872
Lan1g0046 463 MobiDBLite consensus disorder prediction 259 286 - -
Lan1g0046 463 SUPERFAMILY CCCH zinc finger 74 103 IPR036855 GO:0046872
Lan1g0046 463 Gene3D - 25 103 - -
Lan1g0046 463 PANTHER PROTEIN PHOSPHATASE RELATED 18 453 - -
Lan1g0046 463 ProSiteProfiles Zinc finger C3H1-type profile. 26 54 IPR000571 GO:0046872
Lan1g0046 463 SMART c3hfinal6 283 310 IPR000571 GO:0046872
Lan1g0046 463 SMART c3hfinal6 119 146 IPR000571 GO:0046872
Lan1g0046 463 SMART c3hfinal6 329 356 IPR000571 GO:0046872
Lan1g0046 463 SMART c3hfinal6 73 100 IPR000571 GO:0046872
Lan1g0046 463 SMART c3hfinal6 26 53 IPR000571 GO:0046872
Lan1g0046 463 MobiDBLite consensus disorder prediction 259 280 - -
Lan1g0046 463 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 18 453 - -
Lan1g0046 463 Gene3D - 104 155 - -
Lan1g0046 463 MobiDBLite consensus disorder prediction 385 463 - -
Lan1g0046 463 SUPERFAMILY CCCH zinc finger 332 359 IPR036855 GO:0046872
Lan1g0046 463 SUPERFAMILY CCCH zinc finger 287 311 IPR036855 GO:0046872
Lan1g0046 463 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 78 98 IPR000571 GO:0046872
Lan1g0046 463 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 28 53 IPR000571 GO:0046872
Lan1g0046 463 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 333 356 IPR000571 GO:0046872
Lan1g0046 463 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 121 146 IPR000571 GO:0046872
Lan1g0046 463 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 285 309 IPR000571 GO:0046872
Lan1g0046 463 Gene3D - 272 358 - -
Lan1g0046 463 ProSiteProfiles Zinc finger C3H1-type profile. 283 311 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0046 Lan-Chr1 249700 253773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0046 2 431 C2H2 Transcription Factor Family AT5G18550 52.691 4.77e-137 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan1g0046 zf-CCCH 6.8e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0046 - - gmx:100789405 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1289 12 18673748 18680970 Lan1g0046 1 249700 253773 LSH
Lan1g1008 1 20489331 20493052 Lan1g0046 1 249700 253773 LSH
Lan1g0046 1 249700 253773 Lan4g0356 4 5820861 5831216 PCT
Lan1g0046 1 249700 253773 Lan16g0467 16 4585833 4594863 PCT
Lan4g0356 4 5820861 5831216 Lan1g0046 1 249700 253773 PCT
Lan16g0467 16 4585833 4594863 Lan1g0046 1 249700 253773 PCT