Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0045 ATGTCATCTACCTCTAGAACCACTTCAAGTGCATCATCATTCAAAGGATCATATGAACCAAACAAAACTGAGATATGCTCATCACTTATTCTTCAAAGAAACACATGCCCTTCTGGTGAGAGAAGAGGGAGAAGAAAACAATCAGAACCAGGAAGGTTTCTTGGAGTTAGGAGGCGCCCATGGGGTAGATATGCTGCTGAAATAAGAGACCCTACAACAAAAGAGAGGCATTGGCTTGGTACATTTGACACTGCTCAAGAAGCTGCTCTTGCTTATGATAGAGCTGCTCTTTCCATGAAAGGAAACCAAGCAAGAACTAACTTTGTTTACTCAGATAATATCAACTTTCACACTCTTGTTACTTCTCCAATGGATCTTCAAGTTCAACCTCTCTTGCCACCTTCACAGGTTCTTAGTACTAATGCTCAAACCAAACAACAAACCAATCAAAACACCATCTCTCATCACACTGAAAACCCTTCATTGAACAATGACTATATGTGTGTTGCTGAAACTGGTTATGGTTCAGTTCAGGATGATAATTTCTTCTTTTCAAATGACTCTAAGTCTGGTTATCTTGAATGCATTGTTCCTGATAATTGTTTTAGACCTAGTTCTGGTTCCATTACCAACAGTTCAAACTCAAGAAATAGTATTTCAAGTGCTCCATGTGATGATCAAAAGGTAAGTTCATTTAACAACACAAGCTCCATTGAGAGTGATGAGTTACTTCTTGATCACATGACTAGTTCATTCTATCAAGAAGCCTCTTATAGCATGTCAGAATTTTCTTATCCAAGTGAAGTTATTAGTCAAGGATCATGGGATTGGAATTCAAGTGAACTTTCACTTATATTTGACAACAACAATAACAATAACAATAACAACACATTAAGGGTTGACCAAGATGTGTGCATGGATCATACTACATTGTACAATGAGTATGAGTATCCCATTACTGACACTAGTCCAAGCTATGGGCTAATGAATCAAACTGCATCTTCAACAACTACTTGTTTTCCACCCTTTGGGGATGTAGACTTGGGTTACCATCCACTCTTCTGA 1065 0.3812 MSSTSRTTSSASSFKGSYEPNKTEICSSLILQRNTCPSGERRGRRKQSEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGNQARTNFVYSDNINFHTLVTSPMDLQVQPLLPPSQVLSTNAQTKQQTNQNTISHHTENPSLNNDYMCVAETGYGSVQDDNFFFSNDSKSGYLECIVPDNCFRPSSGSITNSSNSRNSISSAPCDDQKVSSFNNTSSIESDELLLDHMTSSFYQEASYSMSEFSYPSEVISQGSWDWNSSELSLIFDNNNNNNNNNTLRVDQDVCMDHTTLYNEYEYPITDTSPSYGLMNQTASSTTTCFPPFGDVDLGYHPLF* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0045 354 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 352 - -
Lan1g0045 354 MobiDBLite consensus disorder prediction 140 161 - -
Lan1g0045 354 MobiDBLite consensus disorder prediction 1 20 - -
Lan1g0045 354 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Lan1g0045 354 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Lan1g0045 354 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF086 8 352 - -
Lan1g0045 354 SUPERFAMILY DNA-binding domain 53 110 IPR016177 GO:0003677
Lan1g0045 354 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700|GO:0006355
Lan1g0045 354 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Lan1g0045 354 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Lan1g0045 354 CDD AP2 52 108 IPR001471 GO:0003700|GO:0006355
Lan1g0045 354 Pfam AP2 domain 55 101 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0045 Lan-Chr1 247089 248487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0045 18 247 AP2-EREBP Transcription Factor Family AT5G18560 39.286 2.86e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan1g0045 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0045 - - lang:109362072 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1290 12 18682894 18683902 Lan1g0045 1 247089 248487 LSH
Lan1g0045 1 247089 248487 Lan4g0357 4 5833878 5834985 PCT
Lan1g0045 1 247089 248487 Lan16g0466 16 4583529 4584555 PCT
Lan4g0357 4 5833878 5834985 Lan1g0045 1 247089 248487 PCT
Lan16g0466 16 4583529 4584555 Lan1g0045 1 247089 248487 PCT