Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0043 ATGATGGAAAGAAGAAAGAGAGAGAGGAATCTAGTGTGTGATTCGATTCGAGATCGTAATTGTCCAATATGTTTGATGAATCTACAACCTCGTTACAAACAAGTTGCGGTTCTAGCGCGTTGTTACCACGCTTACTGCACTCACTGTATTGCGCGTTGGAGTCAGCTCCGTAGAATTTGCCCTCTCTGCAATTCATTCTTCAATTCTTGGTTCTCAATCCACAACCTTTCTTCCACTACCTTCCGCAAACACTTTTTACCACCACTTCATGATACCCAATCACATTTTCCCACTACCACAAGAAGAATTGTTGGTAGAAGAATAAGAAGGGTTGATAGGAGGGCATTGCAATGGCGAAGATCATTTGGTAATCCTGCTTTTGTTACTGCAGATGTTATTGCTCAGAGGAAACTAGAATGGCGTGCCAGCATATACAACAATCTTGGATTGCAACCTGATCCCACAACACTAAGGTGTCTTGAGACAAGATGCAAGGGCTGCAGTCCGTGCAAATTGTTTGTTTCCATGCTGCAACGACACCCATCTCCGAATAAATCCAGAAAAGATGCTGTAAAAAGTGAAATTCTACAACGGATTGAGCCATGGATAAAGAGGGAGCTACAAGCTGTCCTTGGGGACCCAGATCCTACTGTCATTGTTCATGTGGTGACCTCACAGTTCATTGCTTGGCTAGAAGAGAAAGCTAGAATGCCATCTGGGCAGTGTGATGTTGTAGATGCCTTCATTCATCCTCTTCGTCCGTTCCTGCATGATAAAGCTAGTACCTTCTGGCATGAACTAAGCTGTTTTTCTGAGAGCTGCTACAACATGGAAACCTATGATGCAGTGGTTCAGTATAGGCATCTGGAGTGA 873 0.4376 MMERRKRERNLVCDSIRDRNCPICLMNLQPRYKQVAVLARCYHAYCTHCIARWSQLRRICPLCNSFFNSWFSIHNLSSTTFRKHFLPPLHDTQSHFPTTTRRIVGRRIRRVDRRALQWRRSFGNPAFVTADVIAQRKLEWRASIYNNLGLQPDPTTLRCLETRCKGCSPCKLFVSMLQRHPSPNKSRKDAVKSEILQRIEPWIKRELQAVLGDPDPTVIVHVVTSQFIAWLEEKARMPSGQCDVVDAFIHPLRPFLHDKASTFWHELSCFSESCYNMETYDAVVQYRHLE* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0043 290 ProSitePatterns Zinc finger RING-type signature. 41 50 IPR017907 -
Lan1g0043 290 PANTHER TOPOISOMERASE I-BINDING, ARGININE/SERINE-RICH A-RELATED 13 287 - -
Lan1g0043 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 80 IPR013083 -
Lan1g0043 290 ProSiteProfiles Zinc finger RING-type profile. 21 64 IPR001841 -
Lan1g0043 290 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TOPORS 13 287 - -
Lan1g0043 290 SUPERFAMILY RING/U-box 16 76 - -
Lan1g0043 290 Pfam Ring finger domain 20 64 IPR001841 -
Lan1g0043 290 SMART ring_2 21 63 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0043 15 268 C3H Transcription Factor Family AT2G39100 41.132 2.95e-58 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0043 - - adu:107464375 343.584