Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0037 ATGGGAAGAACGTCCAAATCTGAAGCTTCTTCTGCTTCCGATGATGAATCACTATCCGATTCCGAGGAAGAGCAAAATCACCAGATCAATGACCAAGACGACGACGGTCTCGAAGTGGTGGCTCGCTCATCTAGCTCCGGCGACGATGATAATATCCCCGACGATGCTGCTGATGTAAATGCAGATACTGATGATGACAATGAACAGGATGAAGGTAATGTTGATCCTGAAATCAGCAAGGGAGAGAAGGCTAGACTAAGAGAGATGCAAAAAATGAAGCAGCAGAAGATTCAGGAGTTGTTGGATGCACAAAATGCAGCTATTGATTCTGATATGAACAATAAAGGAAAAGGCCGATTGAAGTATCTCTTGCAGCAAACTGAGCTGTTTGCCCATTTTGCCAAATGTGATTCTTCTTCCTCTCAGAAGAAGGCAAAGGGAAGGGGACGTCATGCATCAAAAGTTACTGAAGAAGAAGATGATGAAGAGTACCTCAAAGAAGAAGAAGATGGTTTAGCAAGCACGCGGCTGTTGACACAACCATCTTGTATCCAAGGAAAGATGAGGGATTACCAACTTGCAGGGCTAAACTGGCTCATACGGTTGTATGAGAATGGTATAAATGGAATTCTAGCAGATGAAATGGGACTTGGTAAAACCTTACAAACAATATCTTTGTTGGGCTACTTACACGAGTTCAGAGGAATAACAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTATTACGTGCAGTGAAGTTCCTGGGTAACCCTGATGAAAGGAGACATATAAGGGAGAATCTGTTGGTTGCTGGGAAGTTTGATGTGTGTGTTACAAGTTTTGAAATGGTAATCAAGGAGAAGTCTGCTTTACGCCGATTTAGTTGGCGTTACATAGTTATCGATGAAGCACATCGAATCAAGAATGAGAATTCCCTACTGTCCAAGACAATGAGGCTATACAATACAAACTATCGACTCCTTATAACTGGCACACCACTGCAGAACAATCTTCATGAACTCTGGGCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCTTCTGAAACTTTTGATGAATGGTTTCAAATTTCTGGTGATAATGACCAAGAGGAGGTTGTTCAACAACTACATAAGGTACTCCGCCCTTTTCTGCTGCGAAGGTTGAAGTCAGATGTTGAGAAAGGGTTGCCACCAAAAAAGGAAACTATTCTCAAAGTAGGCATGTCACAAATGCAGAAACAGTACTATAGGGCATTACTGCAGAAGGATCTTGAGGTTGTCAATGCAGGTGGAGAACGGAAACGTCTCCTAAATGTAGCAATGCAGCTACGAAAATGTTGTAATCATCCATATCTCTTCCAAGGTGCTGAACCAGGTCCTCCATATACAACAGGAGATCATCTCATTACAAATGCTGGTAAAATGGTTCTTCTGGATAAGTTACTTCCTAAATTGAAAGAGCGTGATTCAAGGGTCCTTATATTTTCACAAATGACTAGGCTGCTAGACATACTGCAAGATTATTTGATGTTTCGTGGATATCAATACTGTCGCATAGATGGCAATACTGGTGGAGAAGATCGTGATGCTTCCATTGAGGCTTACAACAAACCAGGAAGTGAGAAATTTGTATTCTTGTTATCTACACGGGCTGGAGGTCTTGGCATTAATCTTGCTACTGCTGATGTTGTCATTCTCTATGATAGTGACTGGAACCCACAAGTTGACCTGCAAGCTCAGGACCGTGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTTCGATTTTGCACTGAGTATACTATTGAGGAAAAGGTCATTGAAAGGGCATACAAAAAACTTGCACTTGATGCTCTAGTGATTCAGCAAGGGCGATTAGCTGAGCAGAAGACGGTCAATAAAGATGAGCTACTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTTAGCTCCAAGGACAACACGATTACAGATGAGGATATTGACAGAATTATTGCTAAAGGAGAGGAAGCAACTGCTGAACTTGATGCTAAGATGAAGAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACACTGCTGAGTTATATGATTTTGATGACAAGAAAGATGAGAATGAATTTGATTTCAAAAAAATCGTGAGTGATAACTGGATTGAGCCACCAAAAAGAGAGAGGAAGCGCAATTATTCAGAGTCTGAGTACTTCAAGCAAACATTGCGCCCAAGTGGTCCTACTAAACCAAAGGAGCCCCGTATCCCAAGGATGCCTCAATTGCATGATTTCCAGTTTTTCAACACACAAAGGCTGAATGAACTGTATGAAAAGGAAGTACGCTTTCTCATGTTTCAGCAAACACATCAAAAGAATCAGTTAAAAGACTCAATAGATGTTGACGAACCAGAAGAGGTGGGAAATCCGTTGACTGCTGAAGAGTTGGAAGAAAAGGAGCAGCTGCTTCAGCAGGGATTTTCATCATGGAATCGGAAGGACTTTAATACTTTTATCAGGGCTTGTGAAAAGTATGGCCGAAACGATATAAAAGGTCTTGCTTCTGAGATGGAAGGAAAAACAGAGGAGGAAGTTGAAAGATATGCAAAAGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATTAAAAATATCGAAAGATGGGAGGCAAGAATTTCTCGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTAGACCGCTACAAGAACCCATGGCAAGAGTTGAAAATTCAATATGGGCAAAACAAAGGGAAGTTATACAATGAAGAATGTGACCGATTCATGATATGCATGGTTCACAAACTTGGCTATGGGAATTGGGATGTACTGAAGGCAGCATTTTGGATGTCACCGTTGTTTCGTTTTGATTGGTTCGTCAAGTCTCGCACAACACAGGAACTAACAAGGAGGTGTGACACCCTCATTAGGCTGGTGGAGAAGGAAAACCAAGAATATGATGAAAGGGAGAGACAAGCTCGTAAAGAGAAGAAACTTGCCAAGAGTATGACAACCCCATCAAAGCGATCATCGACAAGACAAACAGAAAGTTCATCTCAGCTGAAGCGCAAGCAGTTAACTACCTAA 3165 0.4098 MGRTSKSEASSASDDESLSDSEEEQNHQINDQDDDGLEVVARSSSSGDDDNIPDDAADVNADTDDDNEQDEGNVDPEISKGEKARLREMQKMKQQKIQELLDAQNAAIDSDMNNKGKGRLKYLLQQTELFAHFAKCDSSSSQKKAKGRGRHASKVTEEEDDEEYLKEEEDGLASTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERRHIRENLLVAGKFDVCVTSFEMVIKEKSALRRFSWRYIVIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSSETFDEWFQISGDNDQEEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNVAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILQDYLMFRGYQYCRIDGNTGGEDRDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDNTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDKKDENEFDFKKIVSDNWIEPPKRERKRNYSESEYFKQTLRPSGPTKPKEPRIPRMPQLHDFQFFNTQRLNELYEKEVRFLMFQQTHQKNQLKDSIDVDEPEEVGNPLTAEELEEKEQLLQQGFSSWNRKDFNTFIRACEKYGRNDIKGLASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERWEARISRKDEIMKAIGKKLDRYKNPWQELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDVLKAAFWMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTTPSKRSSTRQTESSSQLKRKQLTT* 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0037 1054 Gene3D - 189 404 IPR038718 -
Lan1g0037 1054 Gene3D - 929 1032 - -
Lan1g0037 1054 MobiDBLite consensus disorder prediction 1030 1054 - -
Lan1g0037 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 403 IPR027417 -
Lan1g0037 1054 Pfam SNF2-related domain 201 468 IPR000330 GO:0005524|GO:0140658
Lan1g0037 1054 SUPERFAMILY Homeodomain-like 896 1018 IPR009057 -
Lan1g0037 1054 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 200 365 IPR014001 -
Lan1g0037 1054 MobiDBLite consensus disorder prediction 742 772 - -
Lan1g0037 1054 Gene3D ISWI, HAND domain 740 840 IPR036306 GO:0003677|GO:0006338|GO:0031491
Lan1g0037 1054 MobiDBLite consensus disorder prediction 22 38 - -
Lan1g0037 1054 SUPERFAMILY Homeodomain-like 844 894 IPR009057 -
Lan1g0037 1054 PANTHER SNF2/RAD54 HELICASE FAMILY 12 1053 - -
Lan1g0037 1054 MobiDBLite consensus disorder prediction 140 165 - -
Lan1g0037 1054 Gene3D - 409 701 IPR027417 -
Lan1g0037 1054 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 12 1053 - -
Lan1g0037 1054 ProSiteProfiles SANT domain profile. 840 892 IPR017884 -
Lan1g0037 1054 SMART ultradead3 184 376 IPR014001 -
Lan1g0037 1054 MobiDBLite consensus disorder prediction 1010 1029 - -
Lan1g0037 1054 Pfam SLIDE 898 1008 IPR015195 GO:0003677|GO:0005634|GO:0006338
Lan1g0037 1054 MobiDBLite consensus disorder prediction 1 84 - -
Lan1g0037 1054 Pfam Helicase conserved C-terminal domain 491 603 IPR001650 -
Lan1g0037 1054 CDD SF2_C_SNF 489 614 - -
Lan1g0037 1054 MobiDBLite consensus disorder prediction 51 72 - -
Lan1g0037 1054 SMART helicmild6 519 603 IPR001650 -
Lan1g0037 1054 SMART sant 841 890 IPR001005 -
Lan1g0037 1054 Gene3D - 842 924 - -
Lan1g0037 1054 CDD DEXHc_SMARCA1_SMARCA5 185 405 IPR044754 GO:0005524
Lan1g0037 1054 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 493 644 IPR001650 -
Lan1g0037 1054 CDD SANT 844 888 IPR001005 -
Lan1g0037 1054 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 751 843 IPR036306 GO:0003677|GO:0006338|GO:0031491
Lan1g0037 1054 Pfam HAND 752 839 IPR015194 GO:0003677|GO:0006338|GO:0031491
Lan1g0037 1054 Coils Coil 83 106 - -
Lan1g0037 1054 MobiDBLite consensus disorder prediction 1010 1054 - -
Lan1g0037 1054 Coils Coil 991 1025 - -
Lan1g0037 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 405 686 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0037 Lan-Chr1 205735 214079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0037 209 630 RAD5 or RAD16-like Gene Family AT1G02670 26.535 2.31e-41 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan1g0037 SNF2_N 8.8e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0037 K11654 - gmx:100791510 1824.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1005 1 20475861 20483134 Lan1g0037 1 205735 214079 LSH
Lan1g0037 1 205735 214079 Lan16g0460 16 4521027 4529225 PCT
Lan16g0460 16 4521027 4529225 Lan1g0037 1 205735 214079 PCT