Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0027 ATGGCAAGGTATCGAAGCCGTAGCAGAAGCTACAGCCCTCGCCGGCGCAGCCCAACACCACCGCGCCGTGACAGCCGTTCACACAGGGACCGTCGCTCACCACTCCCTTCAGGGTTACTTGTTCGTAATCTTCCACTCGATGCTAGACCCGAAGATCTTTGGGGTCCATTCGAACGCTTTGGTCCTGTCAAAGATGTTTATCTTCCCAAAAATTACTACACTGGTGAGCCTCGTGGCTTTGGATTTGTGAAATATCGATATGGCGAAGATGCAGCTGAGGCAAAGCAACAGCTTGATCATACTATCATTGGTGGACGTGAAATCAGAATTGTCTTTGCTGAAGAAAATAGAAAAACTCCTCAAGAAATGCGTGTTACTACTCGCGGAAGTGATCGACATGGAGGTGGGAGAAAGAGGCATCGTTCAAGATCCAGAACACCTAGACGTCGCTATCATTCCTACTCTCGGTCTCCATCTCCAGCCAGGGAATCTTCAAGGGATGGCAGGGGTAGGAATGATTATTATTCTCCCAAGCGAGGCAGGTCTTATTCTAGGTCTCAATCTCCTAGAGGTGGGAAGGACTATAAGAGGTCTCCACATCCCGGGGAGAATGGTCGGAGTCCTAGCGACAAGAGGGATCGTGCACCTAGCAGATCAAGGTCTTATTCTAGGTCTCCTTCTCCTAGTCCTGGGAAGGAGCATAGGAGATCCCCACATCCCATGGAGAATGGCCGGAGTCCTAATGACAAGAGGGATCATGCACCCAGCAGATCACCAAGTCCTAGAGGTAATGGTCGTAGTCCTTCAAGGTCCCGCTCGCGATCATACAGCCCACACTGA 840 0.5071 MARYRSRSRSYSPRRRSPTPPRRDSRSHRDRRSPLPSGLLVRNLPLDARPEDLWGPFERFGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEAKQQLDHTIIGGREIRIVFAEENRKTPQEMRVTTRGSDRHGGGRKRHRSRSRTPRRRYHSYSRSPSPARESSRDGRGRNDYYSPKRGRSYSRSQSPRGGKDYKRSPHPGENGRSPSDKRDRAPSRSRSYSRSPSPSPGKEHRRSPHPMENGRSPNDKRDHAPSRSPSPRGNGRSPSRSRSRSYSPH* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0027 279 MobiDBLite consensus disorder prediction 133 152 - -
Lan1g0027 279 MobiDBLite consensus disorder prediction 190 219 - -
Lan1g0027 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 109 IPR000504 GO:0003723
Lan1g0027 279 SUPERFAMILY RNA-binding domain, RBD 39 144 IPR035979 GO:0003676
Lan1g0027 279 MobiDBLite consensus disorder prediction 229 257 - -
Lan1g0027 279 MobiDBLite consensus disorder prediction 114 279 - -
Lan1g0027 279 MobiDBLite consensus disorder prediction 1 38 - -
Lan1g0027 279 MobiDBLite consensus disorder prediction 114 132 - -
Lan1g0027 279 Gene3D - 2 128 IPR012677 -
Lan1g0027 279 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28 1 205 - -
Lan1g0027 279 SMART rrm1_1 38 111 IPR000504 GO:0003723
Lan1g0027 279 MobiDBLite consensus disorder prediction 17 35 - -
Lan1g0027 279 MobiDBLite consensus disorder prediction 162 178 - -
Lan1g0027 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Lan1g0027 279 MobiDBLite consensus disorder prediction 260 279 - -
Lan1g0027 279 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 205 - -
Lan1g0027 279 ProSitePatterns Protamine P1 signature. 2 12 IPR000221 GO:0000786|GO:0003677|GO:0005634|GO:0007283|GO:0035092
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0027 Lan-Chr1 138030 140654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0027 41 99 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 1.75e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0027 K12900 - gmx:100788749 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1296 12 18708859 18712287 Lan1g0027 1 138030 140654 LSH