Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0021 ATGGTTTCAATGGTTGCCAGTGGTAGCTGTCAAATGTCTCCTTCAGTTGTCCAAGAAAAAGGAAGTAGGAATAAGAGAAAATTCCGAGCTGATCCATCTTTAGGGGAGTCGGAGAAGATTATTCCTGCACCTCAACATGAGTGCCTCAGTTATGAATTCTCTGCCGAGAAGTTTGAAATAAGCACAGGTCATGTGCAAGCCACTGCTTGTGACTTGTGTAGTGTTAACCATGATCATTCTGATGGGTTGAAGCTTGACCTTGGATTGTATAGTCTTGGAAGCTCGTCCGAAGTCGGGCCTTGTCAACCTAAGGAAGAAGTTGAGGTAGATGAATATGATGATGCTGATTGGAGTGATCTCACGGAAGCCCAACTGGAAGAACTCGTCTTGAGTAATTTGGATGCCATTTTCAAGAGTGCAATTAGAGAAATTGTTGCATGTGGCTACACTGAAGAAGTTACTAGTAAGGCGGTCTTAAGGTCTGGCATCTGTTATGGATGCAAAGATACTGTGTCTAATATAGTTGATAACACTCTAGCACTTCTTAGGAAAGGGCAAGAAGTTGATCCTTCACGAGGGCACTATTTTGAAGATTTAGTGCAACTTGAGAAGTATATCTTGGCTGAATTGGTTTGTGTTCTTCGAGAGGTTAGGCCTTTCTTCAGTACAGGGGATGCAATGTGGTGTTTGTTGATTTGTGATTTGAATGTGTCAGATGCTTGTGCAATGGATAGTGACTCTTTAACTAGTTTAGGTAGTGATGGAGTTGCTGATGGTTGTTCATCTAACCAAATGGAATCACAGTCAAAAGCAGAAGCCAAAATTCCTGAATTTAGTCTTCCAAGTCCTTGTAAGTCAATTCCTGCTGTTTCTCATAATTCTCAATCTAAGAAATCCCTTGTGGCAGGAATTCCTGGTATGAACAACTTAAAGAACTCTCAAACTATTGGTGGACCCTCGGAGAATGATGGTGCTAGTTGTGGACCTGTTACTGTTGATAAAGCATTTAGTGCTACAGGAACATGTCAATCTGAAGAAAAGCATGGGAATGTTAGGAAGGTCCATTCTGGTAGCAGTAAGAGGGACTACATTCTTCGGCAGAAATCATTTCATGCGGAAAAAAGTTATCGGACTTATGGATCTAAAGGGTCTTCAAGAGGTGGAAAGCTGAGTGGCTTAAGTGGTGTAATCATGGATAATAAACTTAAATCTTTATCAGAATCTTCTACCATCAACTTGAAGAGTGCATCCTTACAGATAAGTAAGGCTGTGGGAGTTGAAGTGACTCAAGACAATCTTGATACTAGTTTCTCACCTAATGATAGACCATCTGCCCCTGCTGCATTTAGCCTGGACTCTGCTGATGCTGTCTTTAGATCAATGAATACGTCATATTCAGTACATGCAGAAAATACAAAACCTGCATTCAGTAGCCCCAGTTCATTATCAACCACAGATACCGATCTTTCTCTTTCATTGTCTTCAAAAACCAAGTTGTCTATGGCACCTGTCTGCTGCAATAATGAGGCACCTAATAATAGTCGTGTGGGGATACCGTATGACAAGTCCCTAGAGCAGTGGGTGCCCCAGGATAGAAAGGATGAGATGATTTTGAAGCTGGTTCCAAGGGTCCAGGAGCTACAAAGTCAGCTTCAAGAATGGACGGAGTGGGCCAATCACAAAGTAATGCAGGCTGCTCGTCGTCTGAGTAAGGATAAGGCTGAGCTTAAGACACTAAGGAAAGAAAAAGAGGAAGTTGAGCGTCTTAAGAAAGAGAAGCAGTCTCTCGAGGAAAACACCATAAAGAAGCTTTCTGAGATGGAAAATGCCTTGTGTAAGGCTGGTGGGCAGGTAGAGCGAGCTAATGCTGCGGTCCGGAAGCTTGAGGGGGAGAATGCTACACTGAGGAGAGAGATGGATGCTGCTAAGCTACGAGCTGCAGAAACTGCCGCAAACTGTCAAGAGGTCTCAAGGAGAGAAAAGAAAACTCAGTCGCAGTTTCAGTCATGGGAAAAGCAGAAGTTCTTGCTTCAGGAAGAGTTAATGAGTGAAAAACGGAAATTGGCACAGCTGCTGCAGGAATCAGAGCAAGCTAAAATGCAACAGGGGCAAGTTGAGGCTAGATGGCAACAGGAGGCAAAGGCAAAAGAAGAACTTCTCTTACAGGCCAATTCGATAAGGAAAGAAAGAGAACAAATTGGCGAGTTAGCAAAATCCAAGGGGGATACGATCAAATCGAAAGCAGAGAGGAATCTGCAAAGGTACAGAGACAATATCCATAAACTTGAACAAGAAATTGCTCAACTGAGACTGAAGAGTGACTCTTCCAAGATCGCTGCACTGAGGATGGGCATTGATGGAAGCTATGCCAGCAGATTCGCCAGCACGAAAAACAGCAATGCTCTAGAGGAGCCGCGGGCTTCTTCTATTCCAGAACTAGTAAGCGATTACTCAGTAACCGGCGGCGTGAAACGAGAAAGGGAATGTGTGATGTGCCTTTCTGAGGAGATGTCTGTTGTATTCCTGCCATGTGCTCATCAGGTTGTTTGCACAACATGCAATGAGCTTCATGAGAAACAAGGAATGCAAGATTGTCCTTCTTGCAGAACCCCTATTCAGCAACGTATTCATGCCCATTATACCAATATTTAA 2652 0.4333 MVSMVASGSCQMSPSVVQEKGSRNKRKFRADPSLGESEKIIPAPQHECLSYEFSAEKFEISTGHVQATACDLCSVNHDHSDGLKLDLGLYSLGSSSEVGPCQPKEEVEVDEYDDADWSDLTEAQLEELVLSNLDAIFKSAIREIVACGYTEEVTSKAVLRSGICYGCKDTVSNIVDNTLALLRKGQEVDPSRGHYFEDLVQLEKYILAELVCVLREVRPFFSTGDAMWCLLICDLNVSDACAMDSDSLTSLGSDGVADGCSSNQMESQSKAEAKIPEFSLPSPCKSIPAVSHNSQSKKSLVAGIPGMNNLKNSQTIGGPSENDGASCGPVTVDKAFSATGTCQSEEKHGNVRKVHSGSSKRDYILRQKSFHAEKSYRTYGSKGSSRGGKLSGLSGVIMDNKLKSLSESSTINLKSASLQISKAVGVEVTQDNLDTSFSPNDRPSAPAAFSLDSADAVFRSMNTSYSVHAENTKPAFSSPSSLSTTDTDLSLSLSSKTKLSMAPVCCNNEAPNNSRVGIPYDKSLEQWVPQDRKDEMILKLVPRVQELQSQLQEWTEWANHKVMQAARRLSKDKAELKTLRKEKEEVERLKKEKQSLEENTIKKLSEMENALCKAGGQVERANAAVRKLEGENATLRREMDAAKLRAAETAANCQEVSRREKKTQSQFQSWEKQKFLLQEELMSEKRKLAQLLQESEQAKMQQGQVEARWQQEAKAKEELLLQANSIRKEREQIGELAKSKGDTIKSKAERNLQRYRDNIHKLEQEIAQLRLKSDSSKIAALRMGIDGSYASRFASTKNSNALEEPRASSIPELVSDYSVTGGVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMQDCPSCRTPIQQRIHAHYTNI* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0021 883 PANTHER OS05G0141500 PROTEIN 5 881 IPR046934 -
Lan1g0021 883 SUPERFAMILY RING/U-box 823 875 - -
Lan1g0021 883 Coils Coil 618 652 - -
Lan1g0021 883 Coils Coil 674 708 - -
Lan1g0021 883 PANTHER OS05G0141500 PROTEIN 5 881 - -
Lan1g0021 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 819 880 IPR013083 -
Lan1g0021 883 MobiDBLite consensus disorder prediction 20 34 - -
Lan1g0021 883 MobiDBLite consensus disorder prediction 1 19 - -
Lan1g0021 883 ProSiteProfiles Zinc finger RING-type profile. 829 869 IPR001841 -
Lan1g0021 883 Coils Coil 745 779 - -
Lan1g0021 883 Pfam Family of unknown function (DUF6592) 132 243 IPR046527 -
Lan1g0021 883 Coils Coil 562 606 - -
Lan1g0021 883 Pfam Zinc finger, C3HC4 type (RING finger) 826 874 - -
Lan1g0021 883 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0021 Lan-Chr1 101362 105509 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0021 - - gsj:114420104 1159.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1300 12 18729062 18733268 Lan1g0021 1 101362 105509 LSH
Lan1g0991 1 20388240 20392535 Lan1g0021 1 101362 105509 LSH
Lan1g0021 1 101362 105509 Lan4g0373 4 5980404 5984109 PCT
Lan4g0373 4 5980404 5984109 Lan1g0021 1 101362 105509 PCT