Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan1g0011 | ATGGGAATATCGTGGAGTAACAACAACAGCAGAAGAAGAAATAATCATCATCCTTATCCTCTTCTTCCTCCTCCACCACCACCAAACCCTTACTATTACCCACCACCACCACCGCCACCACCACCACATGGTTACTATTATAACTCAACAAATCCTCAATCTTACTATTACTCTTCTTCATCATCATCATCATCTTCTGATCACCCTTTCTATCCTAATCAACACCATCAAGGTGGTTGGAGTAGTTTTACTCCCCCAATTTGTACTGGTACTGTATCAGCACCACCACCACCACCACCCTATGTTGATCATCAAACTGCGAAGAAGATAAAGAATAATGTTAATTTGCATAAAGATACTCTTACCCTTCAACTCGATCCACTCAACCCCAATCATCATTTGCTTTCTTTCGTTTTCGACGCTCTCTTTCATGGAAGCATTACTATCTTCTACTTAGCCAAAGAGGAAGAACAATGTAGATTTATTCCACTATACCCTGATGCGTTTGAGCCGATCACATTCCCCTTTGAAAAAGGAGCTGGACAGAAATTTTGTCAGCCTTCAGGAACTGGCATTGACCTGGGTTTCTTTGAGTTGGATGATCTTTCAAAGCCCTCACCTAGGGAAGATGTATTTCCTCTTGTAATATGTGCCGAAACACGTGCGGGAACTCCTTCAGATTCATCCCCTCGCATGCAAATAACTCAAGCCGTCTTAGAGAAAAGTAATGGTAGTGGTCCTTTCCAGGTAAAAGTAGTCAAGCAGATTCTGTGGATTGACAATGTTCGTTATGAGCTGAGAGAGCTATATGGAATAGGAGGATCAGCAGCAACAGATTTTGATGATACTGATCCTGGGAAAGAATGTGTAATATGCATGACTGAACCAAAGGACACTGCTGTCTTACCTTGCCGACATATGTGTATGTGCAGTGAGTGTGCCAAAGCTTTGCGGCTTCAATCAAACAAATGCCCTATTTGCCGCCAAGCTATTGAGGAACTTATAGAGATCAAGATAAGTAAGGGCGACCAGTGA | 1035 | 0.4242 | MGISWSNNNSRRRNNHHPYPLLPPPPPPNPYYYPPPPPPPPPHGYYYNSTNPQSYYYSSSSSSSSSDHPFYPNQHHQGGWSSFTPPICTGTVSAPPPPPPYVDHQTAKKIKNNVNLHKDTLTLQLDPLNPNHHLLSFVFDALFHGSITIFYLAKEEEQCRFIPLYPDAFEPITFPFEKGAGQKFCQPSGTGIDLGFFELDDLSKPSPREDVFPLVICAETRAGTPSDSSPRMQITQAVLEKSNGSGPFQVKVVKQILWIDNVRYELRELYGIGGSAATDFDDTDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQAIEELIEIKISKGDQ* | 345 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan1g0011 | 344 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 275 | 338 | IPR013083 | - | |
| Lan1g0011 | 344 | ProSiteProfiles | Zinc finger RING-type profile. | 289 | 328 | IPR001841 | - | |
| Lan1g0011 | 344 | PANTHER | MAHOGUNIN | 1 | 343 | IPR045194 | GO:0061630 | |
| Lan1g0011 | 344 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Lan1g0011 | 344 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
| Lan1g0011 | 344 | MobiDBLite | consensus disorder prediction | 18 | 46 | - | - | |
| Lan1g0011 | 344 | SUPERFAMILY | RING/U-box | 288 | 334 | - | - | |
| Lan1g0011 | 344 | SMART | ring_2 | 289 | 327 | IPR001841 | - | |
| Lan1g0011 | 344 | Pfam | Zinc finger, C3HC4 type (RING finger) | 287 | 333 | - | - | |
| Lan1g0011 | 344 | SUPERFAMILY | beta-sandwich domain of Sec23/24 | 20 | 129 | - | - | |
| Lan1g0011 | 344 | PANTHER | AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED | 1 | 343 | - | - | |
| Lan1g0011 | 344 | CDD | mRING-HC-C3HC5_MGRN1_like---blasttree | 288 | 328 | IPR045195 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan1g0011 | Lan-Chr1 | 49604 | 52130 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan1g0011 | 101 | 344 | C3H Transcription Factor Family | AT3G06140 | 63.306 | 9.22e-107 | 315 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan1g0011 | - | - | gmx:102665712 | 440.269 |