Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g1111 ATGGCTTCAAATCATACTTCTGCTCCAGGGGCAACCAATGATGCTTTGTACAAGGAATTGTGGCATGCCTGTGCTGGGCCCCTTGTCACTCTTCCCCGTGAAGGGGAGAGGGTTTATTACTTCCCTCAAGGTCATATGGAACAGCTGGAGGCATCTATGAATCAGGGATCAGAGCAGAAAATGCCTTCCTTTAATCTGCCTTCTAAAATATTATGTAAAGTGGCTAATGTTCATCTAAAGGCTGAACCTGAAACTGATGAAGTGTATGCACAAATAACTTTGCTTCCTGAACCTGATCAAAGTGAGGTGACTAGCCCTGATGATCCACTGCCTGAACCTTCAAGGTGTACAGTCCATTCATTTTGTAAGACCCTTACTGCTTCGGACACCAGCACTCATGGAGGTTTCTCTGTTCTTCGAAGACATGCGGATGATTGTCTCCCACCACTGGATATGTCTCAACAACCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGGAATGAATGGCATTTTCGACATATTTTTCGAGGGCAGCCCAGGCGCCATTTACTGACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGTGATGCATTTATATTCTTAAGAGGGGAAAATGGAGAGCTGCGAGTTGGAGTCAGGAGGCTCATGAGGCAGCAAAGCAACATGCCATCTTCCGTTATATCTAGTCATAGTATGCATCTCGGTGTTCTGGCCACTGCATCTCATGCTATTGCCACTGGAACACTGTTTTCTGTATTTTACAAGCCCAGAACAAGCCGGTCAGAATTTGTTGTAGGTGTCAACAAGTATCTTGAAGCTCGAAGTCATATACTTTCTGTTGGGATGAGATTCAAAATGAGATTTGAGGGTGATGAAGTTCCTGAAAGAAGGTTCAGCGGCACAATTGTCGGTGTTGAAGATAATAAATCATCAGTCTGGGCTGATTCTGAGTGGCGATCATTAAAAGTTCAGTGGGATGAACCGTCATCAATTTTGCGTCCTGATAGAGTTTCTTCGTGGGAATTGGAGCCACTTGTGTCTACTGCTCCTGCGAACTCCCAGCCAACCCAAAGAAACAAGAGATCAAGGCCTCCCATTCTACCATCAACAATGCCTGATTCTTCTCTGCAAGGCGTATGGAAATCACCAGTTGACTCTCCAACTTTCTCTTATTATGAACCTCAACATAGACAAGATCTTCACCCATCACCTAAATTCAATTCTACAGCATCTAACTTTCTTGGTTTTTGTGGAAATAGCTCTGCTTCCAACAAGTCAATATATTGGTCAAATAGGATTGAAAACTTCACAGAATCTTTTTCACCTGTAGCGCTTAAAGAATCTGGAGAGAAGAGACAGGGCACTGGAAATGGCTGTAAGCTCTTCGGGATACAGCTACTTGGGAATTCTAATGCAGAAGAAAGTCTGCCAACAGTCACTTTGTCAGGAAGGGTAGTTGATGATAGGTCTGTTCCATGTTTGGATGCCGACTCTGACCAGCATTCTGAACCATCAAATGTTAATCGATCTGATATTCCTTCAGTAAGTTTTGATGCTGAAAAATCAAGCATGCAGTCTCCCCAGGATTCACAGAACAGGCAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGACTTAACACGGTTTGATGGATATGAAGATCTGCTTGGGAAATTGGAAGAGATGTTTGACATCAAGGACGAGCTTTGTGGATCCACACAAAAATGGCAGGTTGTTTACACTGATAATGAAGATGACATGATGATGGTTGGGGATGATCCATGGCTTGAGTTCTGTAGTGTCGTAAGGAAAATTTTCATCTACACAGCAGCTGAGGTGAAGAAGCTTTCACCAAAAATAGGATTTCCAATCAATGAAGAAGTTAAACCAAGCAAACTGGATTCTGAAGCAGTGGTCAATCCAGAGGACCAGTCATCTATTGTGGGGTCTGGTATCAAGTTACATGGAAGCTTTTGGCTCATCAATGTTATGATTGATAATGTATTTCAGGTTCAGTGGGATGAACCGTCATCAATTTTGCGTCCTGATAGAGTTTCTTCGTGGGAATTGGAGCCACTTGTGTCTACTGCTCCTGCGAACTCCCAGCCAACCCAAAGAAACAAGAGATCAAGGCCTCCCATTCTACCATCAACAATGCCTGATTCTTCTCTGCAAGGCGTATGGAAATCACCAGTTGACTCTCCAACTTTCTCTTATTATGAACCTCAACATAGACAAGATCTTCACCCATCACCTAAATTCAATTCTACAGCATCTAACTTTCTTGGTTTTTGTGGAAATAGCTCTGCTTCCAACAAGTCAATATATTGGTCAAATAGGATTGAAAACTTCACAGAATCTTTTTCACCTGTAGCGCTTAAAGAATCTGGAGAGAAGAGACAGGGCACTGGAAATGGCTGTAAGCTCTTCGGGATACAGCTACTTGGGAATTCTAATGCAGAAGAAAGTCTGCCAACAGTCACTTTGTCAGGAAGGGTAGTTGATGATAGGTCTGTTCCATGTTTGGATGCCGACTCTGACCAGCATTCTGAACCATCAAATGTTAATCGATCTGATATTCCTTCAGTAAGTTTTGATGCTGAAAAATCAAGCATGCAGTCTCCCCAGGATTCACAGAACAGGCAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGACTTAACACGGTTTGATGGATATGAAGATCTGCTTGGGAAATTGGAAGAGATGTTTGACATCAAGGACGAGCTTTGTGGATCCACACAAAAATGGCAGGTTGTTTACACTGATAATGAAGATGACATGATGATGGTTGGGGATGATCCATGGCTTGAGTTCTGTAGTGTCGTAAGGAAAATTTTCATCTACACAGCAGCTGAGGTGAAGAAGCTTTCACCAAAAATAGGATTTCCAATCAATGAAGAAGTTAAACCAAGCAAACTGGATTCTGAAGCAGTGGTCAATCCAGAGGACCAGTCATCTATTGTGGGGTCTGGTATCTAA 3072 0.4307 MASNHTSAPGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGSEQKMPSFNLPSKILCKVANVHLKAEPETDEVYAQITLLPEPDQSEVTSPDDPLPEPSRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFVVGVNKYLEARSHILSVGMRFKMRFEGDEVPERRFSGTIVGVEDNKSSVWADSEWRSLKVQWDEPSSILRPDRVSSWELEPLVSTAPANSQPTQRNKRSRPPILPSTMPDSSLQGVWKSPVDSPTFSYYEPQHRQDLHPSPKFNSTASNFLGFCGNSSASNKSIYWSNRIENFTESFSPVALKESGEKRQGTGNGCKLFGIQLLGNSNAEESLPTVTLSGRVVDDRSVPCLDADSDQHSEPSNVNRSDIPSVSFDAEKSSMQSPQDSQNRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLGKLEEMFDIKDELCGSTQKWQVVYTDNEDDMMMVGDDPWLEFCSVVRKIFIYTAAEVKKLSPKIGFPINEEVKPSKLDSEAVVNPEDQSSIVGSGIKLHGSFWLINVMIDNVFQVQWDEPSSILRPDRVSSWELEPLVSTAPANSQPTQRNKRSRPPILPSTMPDSSLQGVWKSPVDSPTFSYYEPQHRQDLHPSPKFNSTASNFLGFCGNSSASNKSIYWSNRIENFTESFSPVALKESGEKRQGTGNGCKLFGIQLLGNSNAEESLPTVTLSGRVVDDRSVPCLDADSDQHSEPSNVNRSDIPSVSFDAEKSSMQSPQDSQNRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLGKLEEMFDIKDELCGSTQKWQVVYTDNEDDMMMVGDDPWLEFCSVVRKIFIYTAAEVKKLSPKIGFPINEEVKPSKLDSEAVVNPEDQSSIVGSGI* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g1111 1023 SUPERFAMILY DNA-binding pseudobarrel domain 110 250 IPR015300 -
Lan19g1111 1023 Gene3D - 538 632 - -
Lan19g1111 1023 Gene3D - 894 988 - -
Lan19g1111 1023 Gene3D - 118 223 IPR015300 -
Lan19g1111 1023 Gene3D - 681 713 - -
Lan19g1111 1023 Gene3D - 284 357 - -
Lan19g1111 1023 CDD B3_DNA 119 221 IPR003340 GO:0003677
Lan19g1111 1023 MobiDBLite consensus disorder prediction 354 387 - -
Lan19g1111 1023 Pfam B3 DNA binding domain 121 221 IPR003340 GO:0003677
Lan19g1111 1023 SUPERFAMILY CAD & PB1 domains 543 620 - -
Lan19g1111 1023 Pfam AUX/IAA family 943 989 IPR033389 -
Lan19g1111 1023 Pfam AUX/IAA family 889 935 IPR033389 -
Lan19g1111 1023 Pfam AUX/IAA family 587 633 IPR033389 -
Lan19g1111 1023 Pfam AUX/IAA family 533 579 IPR033389 -
Lan19g1111 1023 MobiDBLite consensus disorder prediction 506 520 - -
Lan19g1111 1023 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 645 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan19g1111 1023 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 664 1000 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan19g1111 1023 PANTHER AUXIN RESPONSE FACTOR 9 664 1000 - -
Lan19g1111 1023 PANTHER AUXIN RESPONSE FACTOR 9 7 645 - -
Lan19g1111 1023 MobiDBLite consensus disorder prediction 855 876 - -
Lan19g1111 1023 SMART B3_2 121 223 IPR003340 GO:0003677
Lan19g1111 1023 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Lan19g1111 1023 MobiDBLite consensus disorder prediction 1004 1023 - -
Lan19g1111 1023 MobiDBLite consensus disorder prediction 862 876 - -
Lan19g1111 1023 ProSiteProfiles PB1 domain profile. 899 992 IPR000270 GO:0005515
Lan19g1111 1023 MobiDBLite consensus disorder prediction 710 743 - -
Lan19g1111 1023 MobiDBLite consensus disorder prediction 1009 1023 - -
Lan19g1111 1023 Pfam Auxin response factor 247 329 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lan19g1111 1023 SUPERFAMILY CAD & PB1 domains 899 976 - -
Lan19g1111 1023 ProSiteProfiles PB1 domain profile. 543 636 IPR000270 GO:0005515
Lan19g1111 1023 MobiDBLite consensus disorder prediction 499 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g1111 Lan-Chr19 18140811 18153903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g1111 2 661 B3 DNA Binding Superfamily AT1G59750 70.315 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan19g1111 B3 1.3e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g1111 K14486 - gmx:100793224 1196.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0799 4 10040796 10044889 Lan19g1111 19 18140811 18153903 LSH