Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g1108 ATGGAAGGTGTGATAAATACTAGAATGTGGCCTAAATGTAAAACTAGTGAATGGGTGAAGGGCAAACTGGTCGGATCAGGATCTTTTGGTACTGTCCACTTGGCTATGAGCAAATCCACTGGTGCACTTTTTGTTGTGAAATCAGCACATTTAGGTGCTGGACGTGAGGCTTTGGACAATGAGGTCAAAATCCTCAAGAGTTTAAGGTCATCCCCATATATTGTGCAATGTTTGGGTACAGAAGAAGAAGGCAAAGGTAATTATAATTATAATAATAATAATCTTAATGTTTTTATGGAGTACATGGCAGGGGGTAGTTTGGCTGATGTGGCACATAAATTTGGTGGGTCATTGAATGAAGAGGTGGTTAGGGTGTATACAAGAGAAATCCTTCTTGGGTTAAAGCACCTTCACCAACATGGAATTGTGCATTGTGACCTTAAGTGCAAGAATGTGCTCTTAGGATCATGTGGCAACATTAAACTTGCTGATTTTGGAAGTGCTATAAGGGTAACAGACTCAAAGGGTGACGATGGATGTTTGAAAAATTGTCTTGTTTCTGTTGTTGGTGGAACTCCTCTATGGATGGCTCCTGAAGTGTTGAGGAATGAGATGCTTGATTTTGCTGCTGATATATGGTCCTTGGGATGTACTGTTATTGAGATGGCAACTGGAACTCCTCCTTGGGCTGGCGAGGTTTCGAATCCGATGGCTGCTATGCTCCGAATTGCGCATGGTGATGGAGTGCCTCAGTTTCCAACTCATTTCTCAACGGATGCTTTGGATTTCTTGAGCAAGTGTTTGGAGAGAGATCCACAAAAGAGGTTCACCTCTGACGAGTTACTTAACCATCCATTTGTTTCAACAAGAACTTCTTCTCATAAAGAATGTGCTTCTTCGCCTGCTAGTGTATTAGAGGTTCAAAGTTTTGAAGATTTAGATGAATTAGAAATTCCAGAGGTGAATGATTTCTCAATCACAAACTCGTTTGCATCTTTTGATGAATCTAAAGGGACAGCGATATGGTGGCAACGAGAAGACAGCACACTTTTATCATCAGGGAATTGGATTACTGTTAGATCAGGATGA 1089 0.4114 MEGVINTRMWPKCKTSEWVKGKLVGSGSFGTVHLAMSKSTGALFVVKSAHLGAGREALDNEVKILKSLRSSPYIVQCLGTEEEGKGNYNYNNNNLNVFMEYMAGGSLADVAHKFGGSLNEEVVRVYTREILLGLKHLHQHGIVHCDLKCKNVLLGSCGNIKLADFGSAIRVTDSKGDDGCLKNCLVSVVGGTPLWMAPEVLRNEMLDFAADIWSLGCTVIEMATGTPPWAGEVSNPMAAMLRIAHGDGVPQFPTHFSTDALDFLSKCLERDPQKRFTSDELLNHPFVSTRTSSHKECASSPASVLEVQSFEDLDELEIPEVNDFSITNSFASFDESKGTAIWWQREDSTLLSSGNWITVRSG* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g1108 362 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Lan19g1108 362 SMART serkin_6 18 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g1108 362 CDD STKc_MAPKKK 17 287 - -
Lan19g1108 362 ProSiteProfiles Protein kinase domain profile. 18 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g1108 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Lan19g1108 362 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE 12 361 - -
Lan19g1108 362 Pfam Protein kinase domain 20 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g1108 362 SUPERFAMILY Protein kinase-like (PK-like) 8 301 IPR011009 -
Lan19g1108 362 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 12 361 - -
Lan19g1108 362 Gene3D Transferase(Phosphotransferase) domain 1 13 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g1108 Lan-Chr19 18130147 18131811 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g1108 15 306 MAP Kinase Kinase Kinase AT1G07150 39.933 1.97e-68 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lan19g1108 Pkinase 1.4e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g1108 - K20716 gmx:100798237 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g1108 19 18130147 18131811 Lan19g1108 19 18130147 18131811 ECH