Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g1089 ATGGAAAAGTACGAGCTTGTGAAGGATATAGGATCTGGCAATTTTGGGGTTGCTAGGCTTATGCGTCATAGAGATACAAAGGAGCTTGTTGCCATGAAATTCATTGAACGTGGTCACAAGATAGATGAGAATGTTGCAAGGGAAATCATAAACCATAGAAGTCTTCGCCATCCCAACATTATTCGCTTCAAGGAGGTGGTTTTGACTCCTACACATCTCGGCATAGTTATGGAGTATGCAGCAGGTGGAGAGCTATTTGAGCGAATTTGTAATGCTGGAAGATTCAGCGAAGATGAGGCTCGATATTTCTTCCAGCAGCTCATTTCAGGAGTCTGCTACTGTCATTCCATGCAAATCTGCCATCGAGACTTGAAGCTGGAGAACACCTTATTGGATGGCAGCCCCGCCCCACGGCTCAAGATTTGTGATTTTGGTTATTCTAAGTCATCTCTGCTTCATTCAAGGCCCAAATCAACAGTAGGAACTCCAGCCTACATTGCACCAGAGGTTCTTTCACGTAGAGAATATGATGGAAAGATGGCAGATGTATGGTCCTGTGGAGTGACTCTTTATGTAATGCTGGTTGGAGCATACCCATTTGAGGACCAAGAGGATCCCAAAAACTTCAGGAAAACCATAAATCGAATTATGGCTGTTCAATACAAGATCCCAGATTATGTTCACATATCTCAAGACTGCATACATCTGCTATCTCACATTTTCGTGGCAAATCCAACTAAGAGAGTGGCCATTAAAGAAATAAAGTCCCACCCATGGTTTCTAAAGAACTTGCCTAGGGAATTGACAGAAATGGCTCAAGCTGTCTACTACAGAAAAGAAAATCCAACCTTTTCCTTTCAGAGCATAGAAGACATCATGAATATTGTTCAGGAGGCCAAAACTCCACCCATAGTTTCGCGGTCAATCGGAGGTTTCGGCTGGGGTGGTGAAGAAGAAGATGATGAAACAAAAGAAGCAGCCGAAGCCGGGGAGGAAGATGAGTACGAAAAGAGAGTCAAGGAAGCGCAGGCTAGCGGAGAATTTCATATCAGTTAA 1056 0.4366 MEKYELVKDIGSGNFGVARLMRHRDTKELVAMKFIERGHKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLGIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVCYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKMADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTINRIMAVQYKIPDYVHISQDCIHLLSHIFVANPTKRVAIKEIKSHPWFLKNLPRELTEMAQAVYYRKENPTFSFQSIEDIMNIVQEAKTPPIVSRSIGGFGWGGEEEDDETKEAAEAGEEDEYEKRVKEAQASGEFHIS* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g1089 351 MobiDBLite consensus disorder prediction 330 344 - -
Lan19g1089 351 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g1089 351 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g1089 351 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g1089 351 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lan19g1089 351 MobiDBLite consensus disorder prediction 315 329 - -
Lan19g1089 351 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Lan19g1089 351 PANTHER SERINE/THREONINE KINASE 2 345 - -
Lan19g1089 351 MobiDBLite consensus disorder prediction 312 351 - -
Lan19g1089 351 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2A-RELATED 2 345 - -
Lan19g1089 351 SUPERFAMILY Protein kinase-like (PK-like) 2 299 IPR011009 -
Lan19g1089 351 CDD STKc_SnRK2 3 259 - -
Lan19g1089 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Lan19g1089 351 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g1089 Lan-Chr19 18026297 18029244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g1089 3 263 CBL-interacting serine-threonine protein kinases AT2G26980 41.912 2.57e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Lan19g1089 Pkinase 2.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g1089 K14498 - gmx:100812259 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0771 4 9769605 9772661 Lan19g1089 19 18026297 18029244 LSH
Lan19g1089 19 18026297 18029244 Lan16g0021 16 106981 109560 LSH