Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g1087 ATGAGCCACCAACGTGAAGCTAATTTAGCGGCGGGTGTTAATTCGAATGATAAAATTCCTAAGCTCAATTGGTTGCAACATGCAAATGCACATGAAAACTTTTCAACCCAGGCAATGTTCTTGACGTCCAATTTTATCTACTCTTTGCCAGCAGAGAACCCTTCATATCAACAACCAAATGGTGGGAGGTTTGTACTCCAACAAAGTCAAAATGTTCAAAGAGCACAAGTTGAAAAGGCTTGGTTTGCTCTTTCAAGTCTACAGAATTCTAGCAGGAACTATGTCCAACCTGGGAAATCTGTTAAAGTTACACCTAGGCATCATGATAACAAGAGAGTAAATTCCTTCCAAGGAACCTATGAGAGCGAAAAACTTAGGCATCCCATTGTCACCACAACTCCAACTGCCGTTAATCACAATTCTCGGGTTTTGGATAGTTCACCGAACAATCATATTAAGTACACGAGACAACTCAACGAGTCCACAAAATGCATAGCAGATGATGTTGATGACATATTCAAGAACATTGATCTTGACCAAATAGTGGAGAACTATCAGTCAACTTGCACTCCCCAGCCATCGATATCCAAGTTTCCTCCTATTACACCAACTGCTGATAAAGATGCTAGAAAGGAGGATAGTTTTTTGCCGCCAGAGTTGTGCTTGGATTGTATACATGGTTACAAGTTAGGGCTTTGCCCTGAAGCAGCAAGTCATTTGCAGGAATTGAAGGATAACCTAATTGCTATATCAAATGAACTGCTTGACAATGGTGAGAACCTCAGCTCTGCGCAGGTAGCAAAGCTTCGCCAAGATAGGTCACAGCTGAATAAGCAAATTCAGCAGCTTGAAAAATATATTCAATCCAGTAATCTTGACGAAGAAAGACAAAGGTCACATTTTTCTGCATCCATGGCACCTCCTAAATATTCCATGTATGAAACACCTCAGCAAACTTATATTGGCACCGGAACATGTGGGTCATCATTCCAGTCGGCTTATATGGGTAATGGAACATGTGGATCATCATCCCAGTTTCATTCATTCTCTACCGTAGATACATATGGCATGTCATCAGGTCCAGTGGAGAGGGAAGCCTTCATCCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGAGACAAACGCTGGAGCAGCCTGGATTTTCCTTGGACCAAGAAGTTAGAGGTTAATAATAAAAAAGTTTTTGGAAATCACTCATTCCGCCCCAATCAAAGGGAGGTCATTAATGCAACAATGAGTGGATGTGATGTTTTTGTTTTGATGCCCACTGGTGGAGGAAAGAGTCTGACCTATCAGCTACCAGCTCTTATTTGTCCTGGTATAACACTTGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCATCTATTGCAGGCAAATATACCTGCTTCTTGCTTAAGTGCCAATATGGAATGGACTGAACAGCAGGATATCCTTAGGGAACTTAATTCTGATCATTGTAAATACAAGTTGTTATATGTGACACCGGAAAAGGTTGCCAGAAGTGATGCTCTTCTGCGGCAGCTAGAGAGTTTACATATTCGTGACTTGCTTGCGAGGATTGTAATTGATGAGGCTCACTGTGTGAGTCAATGGGGGCATGACTTTAGGCCAGATTACCAGGGACTTGGTATATTGAAACAGAAGTTTCCAAATACTCCTGTTTTAGCATTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCACTTGGTCTCGTTAATTGCATTGTTTTTCGGCAAAGTTTTAATCGCCCAAACTTACGGTATTCTGTTGTCCCCAAGACCAAAAAGTGTTTGGAGGAGATTGACAAATTCATTAGAGAAAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTTTCTGAAAAATTACAGGAATGTGGACATAAATCTGCTTTTTATCATGGTAGCATGGATCCTGCACAACGCGCCTATGTACAAAAGCAGTGGAGCAAAGATGAGATCAATATAATTTGTGCTACGGTGGCATTTGGAATGGGTATTAACAAACCTGATGTCCGCTTTGTTATCCACCATTCCCTCCCAAAATCTATTGAAGGCTATCATCAGGAGTGTGGACGAGCTGGCAGAGATGGTCTGCATTCATCCTGTGTGTTATATTATAGCTACAGCGATTATATACGAGTTAAGCATATGATAAGTCAAGGAGTAATGGAGCAAAATACCATGACATCTGGATACAGTCGTTCTAATACTACTAATTCAGGACGGATACTGGAAACAAACACTGAAAATCTTTTGCGAATGGTCAGTTATTGTGAAAATGATGTCGATTGCCGGCGCCTTTTGCAGCTTGTTCATTTTGGGGAGAAGTTTGATTCTTCAACCTGTCAGAAAACATGTGATAATTGTTTGAAGATCACAAGTTTCATTGAGAAGGATGTCACAGAGACTGCAAAGCAATTGGTTGAACTAGTTAAGTTAACAGGACAGAAGTTCTCATCATCTCATGTACTAGAAGTGTATCGTGGTTCCTTAAGCCAAATGATTAAGAAACAAAGGCATGAGACTGTTCGCCTTCATGGTGCTGGGAAGCATCTATCTAAGGGTGAGGCTTCCCGTGTATTGCATCATCTTGTTGTTGAGAATTTTCTTAAGGAGGAGGTAAAGAAAAGTGATGTTTATGGATCAGTGTCATCAATATTGAAGGTAAACGAGCCAAAGGTCCGTAATCTTTTCCTTGGTGGGCAGGGAATTAATATGAGATTCCCATCCTCAGCAAAAGCATCAAAGCCAGGGAAATCAGATGTAACTCCGGCTAAAGGTTCTCTGACATCTGGGAAGTTGAATCCTCCACGAGTAGACACTCTTGCACAGCCTCAAACTGAAATGGACTTGGATCTTTCATCTAAGTTATACACTGCTCTGCGGAAGTTGCGGACGGCTATTGTTAAGGAAGCTGGAGAGGGTGTCATGGCTTACCACATATTTGGTAATGCTACATTGCAGCAGATAAGCAAGAAAGTACCAAGAACAATGGAAGAACTCCTTGATATCAATGGAATTGGCAAGGCTAAAGTAAGCAAGTACGGGGACCAATTACTGGAAACCATCGAAAACACCATAAGCGAACATTACAAGTTGGATAAAAACAGCAGTGGCAGCAAAGGCAGTGTTGATTCTGCGAAAAGGAGACGCCCGTTGATTGAAGAACCAGAGGCAAATGGCGAGGATAATGACTTGCTGAATAGTACTGACCGTTCAAAGAAAAGGACTGTAAAGAGACGAAATAAAAAGACAGAGATATATGATTCGGAAGAGGAAGTAGATAATAATGACTATGGATGCCTTGATGAAGAACTAGATTTTGAGAATATGGATATATAA 3420 0.4076 MSHQREANLAAGVNSNDKIPKLNWLQHANAHENFSTQAMFLTSNFIYSLPAENPSYQQPNGGRFVLQQSQNVQRAQVEKAWFALSSLQNSSRNYVQPGKSVKVTPRHHDNKRVNSFQGTYESEKLRHPIVTTTPTAVNHNSRVLDSSPNNHIKYTRQLNESTKCIADDVDDIFKNIDLDQIVENYQSTCTPQPSISKFPPITPTADKDARKEDSFLPPELCLDCIHGYKLGLCPEAASHLQELKDNLIAISNELLDNGENLSSAQVAKLRQDRSQLNKQIQQLEKYIQSSNLDEERQRSHFSASMAPPKYSMYETPQQTYIGTGTCGSSFQSAYMGNGTCGSSSQFHSFSTVDTYGMSSGPVEREAFIPKIIEVNYIEGSGDKRWSSLDFPWTKKLEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPASCLSANMEWTEQQDILRELNSDHCKYKLLYVTPEKVARSDALLRQLESLHIRDLLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLRYSVVPKTKKCLEEIDKFIRENHFDECGIIYCLSRMDCEKVSEKLQECGHKSAFYHGSMDPAQRAYVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLHSSCVLYYSYSDYIRVKHMISQGVMEQNTMTSGYSRSNTTNSGRILETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSSTCQKTCDNCLKITSFIEKDVTETAKQLVELVKLTGQKFSSSHVLEVYRGSLSQMIKKQRHETVRLHGAGKHLSKGEASRVLHHLVVENFLKEEVKKSDVYGSVSSILKVNEPKVRNLFLGGQGINMRFPSSAKASKPGKSDVTPAKGSLTSGKLNPPRVDTLAQPQTEMDLDLSSKLYTALRKLRTAIVKEAGEGVMAYHIFGNATLQQISKKVPRTMEELLDINGIGKAKVSKYGDQLLETIENTISEHYKLDKNSSGSKGSVDSAKRRRPLIEEPEANGEDNDLLNSTDRSKKRTVKRRNKKTEIYDSEEEVDNNDYGCLDEELDFENMDI* 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g1087 1139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 384 741 IPR027417 -
Lan19g1087 1139 Gene3D HRDC domain 973 1061 IPR044876 -
Lan19g1087 1139 MobiDBLite consensus disorder prediction 1070 1084 - -
Lan19g1087 1139 CDD DEXHc_RecQ 400 599 - -
Lan19g1087 1139 SMART ultradead3 405 608 IPR014001 -
Lan19g1087 1139 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 617 778 IPR001650 -
Lan19g1087 1139 SMART RQC_2 825 936 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lan19g1087 1139 Pfam DEAD/DEAH box helicase 411 579 IPR011545 GO:0003676|GO:0005524
Lan19g1087 1139 Gene3D - 823 933 IPR036388 -
Lan19g1087 1139 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 417 592 IPR014001 -
Lan19g1087 1139 MobiDBLite consensus disorder prediction 950 965 - -
Lan19g1087 1139 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 100 1122 - -
Lan19g1087 1139 SMART helicmild6 642 723 IPR001650 -
Lan19g1087 1139 MobiDBLite consensus disorder prediction 1059 1109 - -
Lan19g1087 1139 SMART hrdc7 977 1059 IPR002121 GO:0003676
Lan19g1087 1139 CDD SF2_C_RecQ 600 732 - -
Lan19g1087 1139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 865 IPR027417 -
Lan19g1087 1139 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 531 540 IPR002464 -
Lan19g1087 1139 Pfam RecQ zinc-binding 734 816 IPR032284 -
Lan19g1087 1139 ProSiteProfiles HRDC domain profile. 977 1059 IPR002121 GO:0003676
Lan19g1087 1139 PANTHER DNA HELICASE RECQ FAMILY MEMBER 100 1122 - -
Lan19g1087 1139 Pfam Helicase conserved C-terminal domain 616 722 IPR001650 -
Lan19g1087 1139 Coils Coil 266 293 - -
Lan19g1087 1139 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 401 876 IPR004589 GO:0004386|GO:0006310
Lan19g1087 1139 Gene3D - 373 599 IPR027417 -
Lan19g1087 1139 Pfam RQC domain 822 939 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lan19g1087 1139 Gene3D - 600 819 IPR027417 -
Lan19g1087 1139 MobiDBLite consensus disorder prediction 935 965 - -
Lan19g1087 1139 Pfam HRDC domain 982 1049 IPR002121 GO:0003676
Lan19g1087 1139 SUPERFAMILY HRDC-like 980 1053 IPR010997 GO:0000166|GO:0044237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g1087 Lan-Chr19 18008545 18017766 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g1087 631 746 Eukaryotic Initiation Factors Gene Family AT3G19760 25.000 8.14e-07 50.8