Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lan19g1087 | ATGAGCCACCAACGTGAAGCTAATTTAGCGGCGGGTGTTAATTCGAATGATAAAATTCCTAAGCTCAATTGGTTGCAACATGCAAATGCACATGAAAACTTTTCAACCCAGGCAATGTTCTTGACGTCCAATTTTATCTACTCTTTGCCAGCAGAGAACCCTTCATATCAACAACCAAATGGTGGGAGGTTTGTACTCCAACAAAGTCAAAATGTTCAAAGAGCACAAGTTGAAAAGGCTTGGTTTGCTCTTTCAAGTCTACAGAATTCTAGCAGGAACTATGTCCAACCTGGGAAATCTGTTAAAGTTACACCTAGGCATCATGATAACAAGAGAGTAAATTCCTTCCAAGGAACCTATGAGAGCGAAAAACTTAGGCATCCCATTGTCACCACAACTCCAACTGCCGTTAATCACAATTCTCGGGTTTTGGATAGTTCACCGAACAATCATATTAAGTACACGAGACAACTCAACGAGTCCACAAAATGCATAGCAGATGATGTTGATGACATATTCAAGAACATTGATCTTGACCAAATAGTGGAGAACTATCAGTCAACTTGCACTCCCCAGCCATCGATATCCAAGTTTCCTCCTATTACACCAACTGCTGATAAAGATGCTAGAAAGGAGGATAGTTTTTTGCCGCCAGAGTTGTGCTTGGATTGTATACATGGTTACAAGTTAGGGCTTTGCCCTGAAGCAGCAAGTCATTTGCAGGAATTGAAGGATAACCTAATTGCTATATCAAATGAACTGCTTGACAATGGTGAGAACCTCAGCTCTGCGCAGGTAGCAAAGCTTCGCCAAGATAGGTCACAGCTGAATAAGCAAATTCAGCAGCTTGAAAAATATATTCAATCCAGTAATCTTGACGAAGAAAGACAAAGGTCACATTTTTCTGCATCCATGGCACCTCCTAAATATTCCATGTATGAAACACCTCAGCAAACTTATATTGGCACCGGAACATGTGGGTCATCATTCCAGTCGGCTTATATGGGTAATGGAACATGTGGATCATCATCCCAGTTTCATTCATTCTCTACCGTAGATACATATGGCATGTCATCAGGTCCAGTGGAGAGGGAAGCCTTCATCCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGAGACAAACGCTGGAGCAGCCTGGATTTTCCTTGGACCAAGAAGTTAGAGGTTAATAATAAAAAAGTTTTTGGAAATCACTCATTCCGCCCCAATCAAAGGGAGGTCATTAATGCAACAATGAGTGGATGTGATGTTTTTGTTTTGATGCCCACTGGTGGAGGAAAGAGTCTGACCTATCAGCTACCAGCTCTTATTTGTCCTGGTATAACACTTGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCATCTATTGCAGGCAAATATACCTGCTTCTTGCTTAAGTGCCAATATGGAATGGACTGAACAGCAGGATATCCTTAGGGAACTTAATTCTGATCATTGTAAATACAAGTTGTTATATGTGACACCGGAAAAGGTTGCCAGAAGTGATGCTCTTCTGCGGCAGCTAGAGAGTTTACATATTCGTGACTTGCTTGCGAGGATTGTAATTGATGAGGCTCACTGTGTGAGTCAATGGGGGCATGACTTTAGGCCAGATTACCAGGGACTTGGTATATTGAAACAGAAGTTTCCAAATACTCCTGTTTTAGCATTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCACTTGGTCTCGTTAATTGCATTGTTTTTCGGCAAAGTTTTAATCGCCCAAACTTACGGTATTCTGTTGTCCCCAAGACCAAAAAGTGTTTGGAGGAGATTGACAAATTCATTAGAGAAAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTTTCTGAAAAATTACAGGAATGTGGACATAAATCTGCTTTTTATCATGGTAGCATGGATCCTGCACAACGCGCCTATGTACAAAAGCAGTGGAGCAAAGATGAGATCAATATAATTTGTGCTACGGTGGCATTTGGAATGGGTATTAACAAACCTGATGTCCGCTTTGTTATCCACCATTCCCTCCCAAAATCTATTGAAGGCTATCATCAGGAGTGTGGACGAGCTGGCAGAGATGGTCTGCATTCATCCTGTGTGTTATATTATAGCTACAGCGATTATATACGAGTTAAGCATATGATAAGTCAAGGAGTAATGGAGCAAAATACCATGACATCTGGATACAGTCGTTCTAATACTACTAATTCAGGACGGATACTGGAAACAAACACTGAAAATCTTTTGCGAATGGTCAGTTATTGTGAAAATGATGTCGATTGCCGGCGCCTTTTGCAGCTTGTTCATTTTGGGGAGAAGTTTGATTCTTCAACCTGTCAGAAAACATGTGATAATTGTTTGAAGATCACAAGTTTCATTGAGAAGGATGTCACAGAGACTGCAAAGCAATTGGTTGAACTAGTTAAGTTAACAGGACAGAAGTTCTCATCATCTCATGTACTAGAAGTGTATCGTGGTTCCTTAAGCCAAATGATTAAGAAACAAAGGCATGAGACTGTTCGCCTTCATGGTGCTGGGAAGCATCTATCTAAGGGTGAGGCTTCCCGTGTATTGCATCATCTTGTTGTTGAGAATTTTCTTAAGGAGGAGGTAAAGAAAAGTGATGTTTATGGATCAGTGTCATCAATATTGAAGGTAAACGAGCCAAAGGTCCGTAATCTTTTCCTTGGTGGGCAGGGAATTAATATGAGATTCCCATCCTCAGCAAAAGCATCAAAGCCAGGGAAATCAGATGTAACTCCGGCTAAAGGTTCTCTGACATCTGGGAAGTTGAATCCTCCACGAGTAGACACTCTTGCACAGCCTCAAACTGAAATGGACTTGGATCTTTCATCTAAGTTATACACTGCTCTGCGGAAGTTGCGGACGGCTATTGTTAAGGAAGCTGGAGAGGGTGTCATGGCTTACCACATATTTGGTAATGCTACATTGCAGCAGATAAGCAAGAAAGTACCAAGAACAATGGAAGAACTCCTTGATATCAATGGAATTGGCAAGGCTAAAGTAAGCAAGTACGGGGACCAATTACTGGAAACCATCGAAAACACCATAAGCGAACATTACAAGTTGGATAAAAACAGCAGTGGCAGCAAAGGCAGTGTTGATTCTGCGAAAAGGAGACGCCCGTTGATTGAAGAACCAGAGGCAAATGGCGAGGATAATGACTTGCTGAATAGTACTGACCGTTCAAAGAAAAGGACTGTAAAGAGACGAAATAAAAAGACAGAGATATATGATTCGGAAGAGGAAGTAGATAATAATGACTATGGATGCCTTGATGAAGAACTAGATTTTGAGAATATGGATATATAA | 3420 | 0.4076 | MSHQREANLAAGVNSNDKIPKLNWLQHANAHENFSTQAMFLTSNFIYSLPAENPSYQQPNGGRFVLQQSQNVQRAQVEKAWFALSSLQNSSRNYVQPGKSVKVTPRHHDNKRVNSFQGTYESEKLRHPIVTTTPTAVNHNSRVLDSSPNNHIKYTRQLNESTKCIADDVDDIFKNIDLDQIVENYQSTCTPQPSISKFPPITPTADKDARKEDSFLPPELCLDCIHGYKLGLCPEAASHLQELKDNLIAISNELLDNGENLSSAQVAKLRQDRSQLNKQIQQLEKYIQSSNLDEERQRSHFSASMAPPKYSMYETPQQTYIGTGTCGSSFQSAYMGNGTCGSSSQFHSFSTVDTYGMSSGPVEREAFIPKIIEVNYIEGSGDKRWSSLDFPWTKKLEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPASCLSANMEWTEQQDILRELNSDHCKYKLLYVTPEKVARSDALLRQLESLHIRDLLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLRYSVVPKTKKCLEEIDKFIRENHFDECGIIYCLSRMDCEKVSEKLQECGHKSAFYHGSMDPAQRAYVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLHSSCVLYYSYSDYIRVKHMISQGVMEQNTMTSGYSRSNTTNSGRILETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSSTCQKTCDNCLKITSFIEKDVTETAKQLVELVKLTGQKFSSSHVLEVYRGSLSQMIKKQRHETVRLHGAGKHLSKGEASRVLHHLVVENFLKEEVKKSDVYGSVSSILKVNEPKVRNLFLGGQGINMRFPSSAKASKPGKSDVTPAKGSLTSGKLNPPRVDTLAQPQTEMDLDLSSKLYTALRKLRTAIVKEAGEGVMAYHIFGNATLQQISKKVPRTMEELLDINGIGKAKVSKYGDQLLETIENTISEHYKLDKNSSGSKGSVDSAKRRRPLIEEPEANGEDNDLLNSTDRSKKRTVKRRNKKTEIYDSEEEVDNNDYGCLDEELDFENMDI* | 1140 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lan19g1087 | 1139 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 384 | 741 | IPR027417 | - | |
Lan19g1087 | 1139 | Gene3D | HRDC domain | 973 | 1061 | IPR044876 | - | |
Lan19g1087 | 1139 | MobiDBLite | consensus disorder prediction | 1070 | 1084 | - | - | |
Lan19g1087 | 1139 | CDD | DEXHc_RecQ | 400 | 599 | - | - | |
Lan19g1087 | 1139 | SMART | ultradead3 | 405 | 608 | IPR014001 | - | |
Lan19g1087 | 1139 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 617 | 778 | IPR001650 | - | |
Lan19g1087 | 1139 | SMART | RQC_2 | 825 | 936 | IPR018982 | GO:0006260|GO:0006281|GO:0043138 | |
Lan19g1087 | 1139 | Pfam | DEAD/DEAH box helicase | 411 | 579 | IPR011545 | GO:0003676|GO:0005524 | |
Lan19g1087 | 1139 | Gene3D | - | 823 | 933 | IPR036388 | - | |
Lan19g1087 | 1139 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 417 | 592 | IPR014001 | - | |
Lan19g1087 | 1139 | MobiDBLite | consensus disorder prediction | 950 | 965 | - | - | |
Lan19g1087 | 1139 | PANTHER | ATP-DEPENDENT DNA HELICASE Q-LIKE 4A | 100 | 1122 | - | - | |
Lan19g1087 | 1139 | SMART | helicmild6 | 642 | 723 | IPR001650 | - | |
Lan19g1087 | 1139 | MobiDBLite | consensus disorder prediction | 1059 | 1109 | - | - | |
Lan19g1087 | 1139 | SMART | hrdc7 | 977 | 1059 | IPR002121 | GO:0003676 | |
Lan19g1087 | 1139 | CDD | SF2_C_RecQ | 600 | 732 | - | - | |
Lan19g1087 | 1139 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 598 | 865 | IPR027417 | - | |
Lan19g1087 | 1139 | ProSitePatterns | DEAH-box subfamily ATP-dependent helicases signature. | 531 | 540 | IPR002464 | - | |
Lan19g1087 | 1139 | Pfam | RecQ zinc-binding | 734 | 816 | IPR032284 | - | |
Lan19g1087 | 1139 | ProSiteProfiles | HRDC domain profile. | 977 | 1059 | IPR002121 | GO:0003676 | |
Lan19g1087 | 1139 | PANTHER | DNA HELICASE RECQ FAMILY MEMBER | 100 | 1122 | - | - | |
Lan19g1087 | 1139 | Pfam | Helicase conserved C-terminal domain | 616 | 722 | IPR001650 | - | |
Lan19g1087 | 1139 | Coils | Coil | 266 | 293 | - | - | |
Lan19g1087 | 1139 | TIGRFAM | recQ_fam: ATP-dependent DNA helicase, RecQ family | 401 | 876 | IPR004589 | GO:0004386|GO:0006310 | |
Lan19g1087 | 1139 | Gene3D | - | 373 | 599 | IPR027417 | - | |
Lan19g1087 | 1139 | Pfam | RQC domain | 822 | 939 | IPR018982 | GO:0006260|GO:0006281|GO:0043138 | |
Lan19g1087 | 1139 | Gene3D | - | 600 | 819 | IPR027417 | - | |
Lan19g1087 | 1139 | MobiDBLite | consensus disorder prediction | 935 | 965 | - | - | |
Lan19g1087 | 1139 | Pfam | HRDC domain | 982 | 1049 | IPR002121 | GO:0003676 | |
Lan19g1087 | 1139 | SUPERFAMILY | HRDC-like | 980 | 1053 | IPR010997 | GO:0000166|GO:0044237 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lan19g1087 | Lan-Chr19 | 18008545 | 18017766 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lan19g1087 | 631 | 746 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 25.000 | 8.14e-07 | 50.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lan19g1087 | K10901 | - | gmx:100817867 | 1688.32 |