Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g1078 ATGGGAAGAAAAACTCAGAGAGGACAAGGTTCACTGAAACAAACCCTTCGCCGTCGATTAGAATCGTTCGAAACCAAACACTCCTCCGTCGACGATATCGTTAACCACCTTCGTTCTAAGTATCCCGATTACGGAAGACAAAAACGACAAACCCTAGCTCTCCACGTTCGCCACGCGATTAACTCACGCGCCAATACATTCGACGATGGTGATGATGATGATGAAGAATTTGAAGAGATTAACCGAAGCGCGTCACGGAAGAGGGTAAAGAGAAATGATGAGAGTGAAGAGAGATTGCAAAGAATCGAAGCATCGCATATTCGAAGTAGGACGAAGAGTGGTAAGTTTCATAATCTGCAATCATCGGAATCGTCGTCTTCGGCGAGTGACGGAGAAGGAGAAGGAGATGAATCGGTGTCTACGTCGGAGGACGCAATTTACGAGGAGAAATTCGAGCCTGCTGTTGATTTGATGAAAACAATGTTGCGGAATTCGTATAAGAGCGAGGAGAAGAGCAATAACGTGGACGTTGAATTGGAGGTTGCGAGTAGTAGCAAAGCTACTGCTGCAATCACAAACGATGGCGGCGAAGGAAGGGCTGAGAAGTCGAACAACGTCGGCCGTGTTTTGGAGGAGGTGAAAGGGAAGAAGGAAGGACCAATGTTTAAGGATTTAGGAGGAATGAAAGAAGTTTTGGAGGAATTGAAAATGGAAGTGATAGTGCCATTGTGTCATCCACAGGTGCCTAGGCAGTTAGGAGTCAGACCAATGGCTGGGATTTTGTTGTACGGACCGCCGGGATGTGGAAAGACTAAACTAGCTCATGCCATTGCTAATGAGACTTCGCTTCCGTTTTATCAGATTTCAGCCACTGAACTGGTTTCTGGAGTATCAGGTGCATCTGAAGAAAATATCAGAGAGCTTTTCTCCAAAGCATACAGGACTGCTCCGTCCATTGTATTTATTGACGAGATTGATGCAATTGCTTCAAAAAGAGAAAACTTACAACGGGAGATGGAGAAGCGAATTGTGACACAGTTGATGTCTTGCATGGACCAATCAAGCAGGCTTATGCAACCAGCTGAAGGTTCAGAAAGTTCTGATGACCGCCCTGGCTATGTGCTTGTAATTGGAGCTACAAATAGGCCTGATGCGGTTGATCCTGCCATCAGAAGACCTGGTCGGTTTGATCGTGAGATTGTTGTTGGCATTCCTGATGAATCTGCAAGGGAGGAAATACTTTCAGTGCTCACTCGCAACCTTAAGCTTGATGGTTCATTTGACTTGCAAAAAATAGCCAGGTCTACGCCAGGGTTTGTCGGTGCTGATTTGGCAGCTCTAGCTAACAAGGCTGGTAATCTAGCAATGAAGAGAATTATTGATGAAAGAAAACATGATCTTATGAGTGATCATACTGAAGATTGGTGGAGGGAACCTTGGCTGCCTGAAGAAATCGATAAACTTGCCATCAAAATGTCTGATTTTGAGGAAGCAGTAAAAATGGTGCAACCTTCGTCAAGAAGAGAAGGGTTCTCTTCCATTCCTAATGTAAAATGGGAAGACGTTGGTGGGCTTGACGTTCTGAGACAGGAGTTTGAACGCTACATAGTAAGGCGTATAAAATATCCTGAGGATTATGAGGGGTTTGGGGTGGATCTTGAGACTGGGTTTTTGCTTTATGGACCTCCAGGCTGTGGTAAAACACTAATTGCCAAAGCTGTTGCCAACGAGGCAGGAGCTAATTTCATTCATATTAAGGGGCCTGAACTTTTAAATAAATACGTTGGAGAAAGTGAGTTAGCTGTTCGGACATTGTTTAGTCGTGCAAGGACATGTTCGCCCTGTGTACTCTTTTTTGATGAGGTGGATGCTTTGACAACCAAACGTGGCAAAGAAGGTGGATGGGTCATTGAACGACTATTGAACCAGTTGCTTATTGAGTTAGATGGTGCAGACCAGCGGCAAGGTGTTTTTGTCATTGGTGCTACAAATAGGCCTGAGGTGATGGATCGTGCTGTCTTGCGACCTGGGAGGTTTGGCAAACTTCTTTATGTTCCTCTGCCAAGTGCTGATGAGCGGGTTCTGATATTGAAAGCTCTTGCCCGGAAGAAGCCTATTGATGCTAGCGTGGATTTAAGTGCCATAGCAAGAATGGAAGCTTGTGAAAATCTCAGTGGCGCCGACCTCTCTGCTTTGATAAATGAAGCAGCAATGGCTGCTCTAGAAGAGAAATTGACCTCAACAGAGATAACTTACGATGCGTTTTCCATCAAGACAAGTCATTTTGAGGCAGCATTGAGAAAAGTTTCCCCCTCAGTGTCAGACATGCAAAAGAAGTTCTATCAGCGTTTATCAGAAAGCTTTAAAGCAGCATGA 2376 0.4487 MGRKTQRGQGSLKQTLRRRLESFETKHSSVDDIVNHLRSKYPDYGRQKRQTLALHVRHAINSRANTFDDGDDDDEEFEEINRSASRKRVKRNDESEERLQRIEASHIRSRTKSGKFHNLQSSESSSSASDGEGEGDESVSTSEDAIYEEKFEPAVDLMKTMLRNSYKSEEKSNNVDVELEVASSSKATAAITNDGGEGRAEKSNNVGRVLEEVKGKKEGPMFKDLGGMKEVLEELKMEVIVPLCHPQVPRQLGVRPMAGILLYGPPGCGKTKLAHAIANETSLPFYQISATELVSGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIASKRENLQREMEKRIVTQLMSCMDQSSRLMQPAEGSESSDDRPGYVLVIGATNRPDAVDPAIRRPGRFDREIVVGIPDESAREEILSVLTRNLKLDGSFDLQKIARSTPGFVGADLAALANKAGNLAMKRIIDERKHDLMSDHTEDWWREPWLPEEIDKLAIKMSDFEEAVKMVQPSSRREGFSSIPNVKWEDVGGLDVLRQEFERYIVRRIKYPEDYEGFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCVLFFDEVDALTTKRGKEGGWVIERLLNQLLIELDGADQRQGVFVIGATNRPEVMDRAVLRPGRFGKLLYVPLPSADERVLILKALARKKPIDASVDLSAIARMEACENLSGADLSALINEAAMAALEEKLTSTEITYDAFSIKTSHFEAALRKVSPSVSDMQKKFYQRLSESFKAA* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g1078 791 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 515 787 IPR027417 -
Lan19g1078 791 CDD AAA 556 687 - -
Lan19g1078 791 Gene3D - 207 404 IPR027417 -
Lan19g1078 791 Gene3D - 405 509 - -
Lan19g1078 791 Gene3D - 515 781 IPR027417 -
Lan19g1078 791 Pfam Nucleolin binding domain 13 62 IPR031996 -
Lan19g1078 791 CDD AAA 255 403 - -
Lan19g1078 791 Pfam ATPase family associated with various cellular activities (AAA) 260 402 IPR003959 GO:0005524|GO:0016887
Lan19g1078 791 Pfam ATPase family associated with various cellular activities (AAA) 558 686 IPR003959 GO:0005524|GO:0016887
Lan19g1078 791 MobiDBLite consensus disorder prediction 79 110 - -
Lan19g1078 791 Gene3D - 688 767 - -
Lan19g1078 791 MobiDBLite consensus disorder prediction 64 147 - -
Lan19g1078 791 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 83 788 - -
Lan19g1078 791 ProSitePatterns AAA-protein family signature. 657 675 IPR003960 GO:0005524|GO:0016887
Lan19g1078 791 ProSitePatterns AAA-protein family signature. 374 392 IPR003960 GO:0005524|GO:0016887
Lan19g1078 791 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 509 IPR027417 -
Lan19g1078 791 MobiDBLite consensus disorder prediction 114 135 - -
Lan19g1078 791 Pfam AAA+ lid domain 709 751 IPR041569 -
Lan19g1078 791 Pfam AAA+ lid domain 427 462 IPR041569 -
Lan19g1078 791 PANTHER AAA-FAMILY ATPASE 83 788 - -
Lan19g1078 791 SMART AAA_5 553 689 IPR003593 -
Lan19g1078 791 SMART AAA_5 256 406 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g1078 Lan-Chr19 17907283 17911873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g1078 488 789 Calmodulin-binding Proteins AT3G56690 43.750 1.51e-70 249