Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g1055 ATGTCGGAAGCGGATGAGTTTCGTTGCTTCATTGGTGGCCTTTCATGGTCAACATCTGATAGAAAATTAAAGGATACATTTGAAAAGTACGGCAGGCTTGTTGAGGCAAAGGTGGTAGTTGACAAATTCTCTGGGCGCTCTCGCGGTTTCGGGTTTGTCACATTTGATGATAAGAAAGCTATGGAAGAGGCTATAGACGCCATGAATGGAGTTGATTTAGATGGTCGAACTATTACTGTTGATAGAGCTCAGCCTCAACAAGGATCAAGTAGAGACGGTGGTGATCGCCACCGAGAACGTGATCGTGAGCGGGGCCGTGATCGTGATTATGGAGGTGGTCGGGGATCTAATGGTGGTGAATGCTTTAAGTGTGGTAAACCTGGTCATTTTGCTAGAGAGTGTCCCAGTGAAGGTGAAAGAGGAGGAAGATATGGTGACATGGAAAGTAGATATGGTGGCAGGAGTGGTGGTCCTGATAGGAATGCAGACCGTTCTTCTGGTCGGCGCAATAGGGATGGTGGTAGTCATGGTGATTCTGGCAATGATCGATATGATCGTGATCGAGCTGGACCATATGAGCGACGGGGATCCGGAGGCTATCATTGA 606 0.4785 MSEADEFRCFIGGLSWSTSDRKLKDTFEKYGRLVEAKVVVDKFSGRSRGFGFVTFDDKKAMEEAIDAMNGVDLDGRTITVDRAQPQQGSSRDGGDRHRERDRERGRDRDYGGGRGSNGGECFKCGKPGHFARECPSEGERGGRYGDMESRYGGRSGGPDRNADRSSGRRNRDGGSHGDSGNDRYDRDRAGPYERRGSGGYH* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g1055 201 Gene3D - 117 173 - -
Lan19g1055 201 MobiDBLite consensus disorder prediction 76 201 - -
Lan19g1055 201 SMART rrm1_1 8 81 IPR000504 GO:0003723
Lan19g1055 201 PANTHER TRANSFORMER-2-RELATED 1 172 - -
Lan19g1055 201 SUPERFAMILY Retrovirus zinc finger-like domains 103 141 IPR036875 GO:0003676|GO:0008270
Lan19g1055 201 Gene3D - 2 116 IPR012677 -
Lan19g1055 201 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Lan19g1055 201 ProSiteProfiles Zinc finger CCHC-type profile. 121 136 IPR001878 GO:0003676|GO:0008270
Lan19g1055 201 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 172 - -
Lan19g1055 201 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Lan19g1055 201 SMART c2hcfinal6 120 136 IPR001878 GO:0003676|GO:0008270
Lan19g1055 201 MobiDBLite consensus disorder prediction 126 147 - -
Lan19g1055 201 SUPERFAMILY RNA-binding domain, RBD 4 115 IPR035979 GO:0003676
Lan19g1055 201 MobiDBLite consensus disorder prediction 91 113 - -
Lan19g1055 201 MobiDBLite consensus disorder prediction 161 194 - -
Lan19g1055 201 Pfam Zinc knuckle 120 136 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g1055 Lan-Chr19 17721693 17724538 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g1055 9 84 Eukaryotic Initiation Factors Gene Family AT1G22760 32.895 1.56e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g1055 - - lang:109329957 321.242