Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g1044 ATGGCAGCTGCAACATCTGGTGCAGTGTTGGGATCTTCTTTCTTATGTAGAGGAAAGAAGAGTCAAACCCTGTTAGCTAGTGCTATAGGGAAAGTTGGTGCTTCTGTTAGTCCTAAAAGGCTTAATGTGGCTGCTTCTGCTGCACCCAAAAAATCATGGATCCCTGCTGTTAAAGGTGGTGGAAATTTAGTTGACCCTGAATGGCTTGATGGCTCGCTAGCAGGTGATTATGGTTTTGACCCTCTAGGCCTAGGAAAAGACCCATCATTCCTGAAATGGTACAGAGAAGCTGAACTGATTCATGGAAGATGGGCAATGGCTGCAGCTTTAGGCATCTTTGTTGGCCAAGCATGGAGTGGAGTTCCATGGTTTGAGGCTGGAGCTGACCCTAATGCAATTGCTCCTTTCTCATTTGGTACACTTCTAGGTACTCAGTTACTTCTCATGGGATGGGTAGAGAGCAAAAGATGGGTGGACTTCTTCAACCCAGACTCACAGTCAGTGGAATGGGCCACTCCATGGTCGAAAACCGCCGAGAATTTCGCCAACGCCACGGGTGATCAAGGCTACCCTGAGGGCAAATTCTTTGACCCTTTGAGCCTTGCTGGCACAATAAAAGATGGTGTTTACATTGCAGATACAGAGAAGGTAGAAAGATTGAAATTTGCTGAGATTAAGCATGCTAGGATTGCTATGTTGGCTATGCTTACTTTCTACTTTGAAGCTGGACAAGGGAAAACACCACTTGGTGTTCTTGGCTTGTAA 765 0.4601 MAAATSGAVLGSSFLCRGKKSQTLLASAIGKVGASVSPKRLNVAASAAPKKSWIPAVKGGGNLVDPEWLDGSLAGDYGFDPLGLGKDPSFLKWYREAELIHGRWAMAAALGIFVGQAWSGVPWFEAGADPNAIAPFSFGTLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFANATGDQGYPEGKFFDPLSLAGTIKDGVYIADTEKVERLKFAEIKHARIAMLAMLTFYFEAGQGKTPLGVLGL* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g1044 254 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 254 IPR001344 GO:0009765|GO:0016020
Lan19g1044 254 Pfam Chlorophyll A-B binding protein 66 242 IPR022796 -
Lan19g1044 254 SUPERFAMILY Chlorophyll a-b binding protein 59 254 - -
Lan19g1044 254 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP24 10A, CHLOROPLASTIC 1 254 - -
Lan19g1044 254 Gene3D Chlorophyll a/b binding protein domain 66 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g1044 Lan-Chr19 17660443 17662189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g1044 1 254 Chloroplast and Mitochondria Gene Families AT1G15820 80.233 8.22e-146 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g1044 K08917 - gmx:100500118 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0750 4 9681548 9682997 Lan19g1044 19 17660443 17662189 LSH
Lan12g0237 12 5032999 5034939 Lan19g1044 19 17660443 17662189 PCT
Lan19g1044 19 17660443 17662189 Lan12g0237 12 5032999 5034939 PCT