Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g1039 ATGGCGGAAGCTGCTTCTTACGGATTGGGTCCTCGATTAGATATTCAGCAATTACAAATTGAAGCCCAGCATCGGTGGTTGCGACCTGCAGAAATTTGTGAAATTCTCCGTAATTATCGGATATTTCACATCACACCAGAACCTCATAACAGGCCACCAAGTGGTTCGCTTTTTCTTTTTGATCGTAAGGTTTTGAGATACTTTAGAAAGGATGGACACAATTGGAGAAAGAAAAAAGATGGAAAAACTGTGAAAGAAGCTCATGAAAAGTTGAAGGTGGGAAGTGTTGATGTGTTACACTGCTATTATGCCCATGGAGAAGATAATGAAAATTTTCAGAGGCGAAGCTACTGGATGCTTGAACCAGATATGATGCACATAGTTTTTGTTCACTACTTGGAAGTTAAGGGTAACAAGACAACTATTGGAGGAATTACAGAAAGTGATGATGTTACAACAGATTCCCAAAGGGTCACCTCTCCATCATCTGGCTTTCCTGTAAGTTATAGCACTGCGCCTTCACTGAGTACAGATTCCATGAGCCCAACTAGCAGCCTGACATCTTTACGTGAAGATGCTGATTCTGGTGGTCATGGGCAGTCATCAACTTCTGGAACAGATTATACCCCTCTTCTTCCTGGGGATAAATTTAGAGGAGATGATACTACTTACATTGATGGCCAGAAAGCACATGGCATGGCATCCTGGGACAATGGCTTGAATCAATGCACTACGGCATTGCATACTGATCCTTCTCTTATATCATTTCCTTCCATTCCATCCAGTTTGGTGGGGAACATTCTTGATCAAGAACATACCGTTTTCAGTGACCTGTTAGTGGGTAGAAATGGCCTCACCGGGGAGGCAGGGAGCTCTCAGTCTCTCCAATCAAATTGGCAGATTACTTTTGAAGACAATTCAGGACACTTGCCAGCCATAACCCAATCACCAAGTTTGGATTTTGGATCTGAATATAGCACTGGTTTACTAGGGAATGAAACTCATAGTGGAAGTTCTGAAATTGCTCCAAACCTGTTCAGCTTTCATGGTAAGCCAAAAGAGCAGCATTTGCAGCAATACTATCCAGAGCAGCATGCAGACGGACAATCTCAACTTGCACTAAAATTCAGTTCTGTGAATAATGTTCCTGGTGAAGAGAGTATTAACTTTGCCTTCACTGCAAAGCGCACATTATTGGATAGAGACGAAAGCCTGAAGAAGGTTGATAGCTTCTCTCGGTGGGTTAGTAAAGAACTTGGAGAGGTTGATGATTTGAATATGCAGTCCTCACCTGGTATTTCTTGGAGTACAGATGAATGTGGGCATGTGATTGATGATGCCTCATTGAGTCCATCCCTCTCCCGGGACCAGCTGTTTAGCATAAATGATTTTTCACCTAAATGGGCTTATTCTGAATCAGAAACTGAGGTGTTGATTATTGGAGCATTTTTGAAGAGTCAACCTGAGGGGACCAACTGTAACTGGTCCTGTATGTTTGGGGAGGTGGAGGTTCCTGCTGAGGTTTTAGCTAATGGAATTCTGTGCTGTCAAGCTCCACCTCTTAAGATTGGACGAGTCCCCTTCTATGTAACATGTTCCAATAGGTTAGCTTGTAGTGAGGTGCGGGAATTCGATTACAGAGAGAGCATTTCTGGAAATGTAGATTTCGCAGATATCTACCACAGTTCATTTGAAATGGCACTTCATTTGCAAGTGGAGGAGTTGCTTTCTTTAAAACCAGTGCACCTTCCAAATCAAACATTTGAGGGTTATATGGAGCAAAGAAACATAATTTTTAAGCTTATTTCACTGAGGGAGGAAGAGGAATATTCAAGTAAGGAAGAGCACAGTGTAGAGATGGATATATCACAACAAAAGGTTAAGGATCATCTTCACAGGCAGGTTAAAGAGAAACTGTATTCATGGCTTCTTCGCATAGTAACTGACAGTGGTAAAGGGCCAAATATCTTAGACAAAAATGGGCAGGGTGTGTTACATTTAGCTGCTGCTCTTGGTTTTGACTGGGGCATAAAACCAATTTTATTTGCTGGAGTTAATATCAATTTCCGTGATGTGAATGGTTGGACGGCTCTACATTGGGCTGCATTTTGTGGCCGAGAGCGGACAGTTGCTGTCCTTGTCTCCATGGGCGCGGATTCGGGAGCTTCGACTGATCCATCTCCAGCATTTCCTTCAGGTAGAACACCTGCAGATATTGCATCTAGCAATGGGCACAAAGGAATATCTGGTTTTCTTGCTGAGTCTTTATTAACCAGACATCTCGAATCTCTCACAATGGATGATCAACACAAAGGTGATAGGCAACAAATTTCAGGGTTGAACTCAGTGCAGACAGTTTCCGAAAAAATCGCAACACCTGTGTTCTACGGTGATATGCCAGATTCCCTCAGTCTCAAGGATTCTCTTACTGCTGTCCGTAATGCTATACAAGCTGCTGATCGTATACATCAAGTCTTCAGAATGCAGTCATTTCAGAGGAAGCAATTAAATCAGTATGAAGATGGTGATGATGAGTATGGGTTGGCGGAGCAGCAAGCGCTTTCCCTTATAGCTTCTAAGAAATGCAAATCGGGACAAGGAGATGGTTTAGTCAATGCTGCTGCAGTAAAGATACAGAAAAAGTTTCGTGGTTGGAAGAAGAGACAAGAGTTCTTGTTCATTCGTCAAAGAGTTGTTAAAATCCAGGCCCATGTTAGAGGTCACCAGGTAAGGAAGAAGTATAAAACAATCATCTGGTCTGTGGGAATATTGGAGAAGGTTATATTGCGGTGGAGACGCAAGGGCAGTGGTTTACGTGGATTTCGACAAGATGCCCTTCCTAAGGCTCCCAGCCAACAAAGTGATCCTGTGAAAGAGGATGATTATGATTTTCTCAAGGAAGGAAGGAAACAAAGTGAGGAAAAGTTCCAAAAGGCCCTTTCAAGGGTGAAGTCCATGGTTCAGTATCCAGAGGCAAGGGCTCAATACCGGCGGCTGCTAAATGTCGTTGAGGAATTCCATCAAACCAAGGAATGCAATATGGATTTGATCAATACTGAAGACACAGTTGAAGGTGTGGAGGATTTGATTGATATTGATATGCTTTTAGATGATGATAATTTCATTCCTATTGCATTTCATTGA 3144 0.4249 MAEAASYGLGPRLDIQQLQIEAQHRWLRPAEICEILRNYRIFHITPEPHNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEDNENFQRRSYWMLEPDMMHIVFVHYLEVKGNKTTIGGITESDDVTTDSQRVTSPSSGFPVSYSTAPSLSTDSMSPTSSLTSLREDADSGGHGQSSTSGTDYTPLLPGDKFRGDDTTYIDGQKAHGMASWDNGLNQCTTALHTDPSLISFPSIPSSLVGNILDQEHTVFSDLLVGRNGLTGEAGSSQSLQSNWQITFEDNSGHLPAITQSPSLDFGSEYSTGLLGNETHSGSSEIAPNLFSFHGKPKEQHLQQYYPEQHADGQSQLALKFSSVNNVPGEESINFAFTAKRTLLDRDESLKKVDSFSRWVSKELGEVDDLNMQSSPGISWSTDECGHVIDDASLSPSLSRDQLFSINDFSPKWAYSESETEVLIIGAFLKSQPEGTNCNWSCMFGEVEVPAEVLANGILCCQAPPLKIGRVPFYVTCSNRLACSEVREFDYRESISGNVDFADIYHSSFEMALHLQVEELLSLKPVHLPNQTFEGYMEQRNIIFKLISLREEEEYSSKEEHSVEMDISQQKVKDHLHRQVKEKLYSWLLRIVTDSGKGPNILDKNGQGVLHLAAALGFDWGIKPILFAGVNINFRDVNGWTALHWAAFCGRERTVAVLVSMGADSGASTDPSPAFPSGRTPADIASSNGHKGISGFLAESLLTRHLESLTMDDQHKGDRQQISGLNSVQTVSEKIATPVFYGDMPDSLSLKDSLTAVRNAIQAADRIHQVFRMQSFQRKQLNQYEDGDDEYGLAEQQALSLIASKKCKSGQGDGLVNAAAVKIQKKFRGWKKRQEFLFIRQRVVKIQAHVRGHQVRKKYKTIIWSVGILEKVILRWRRKGSGLRGFRQDALPKAPSQQSDPVKEDDYDFLKEGRKQSEEKFQKALSRVKSMVQYPEARAQYRRLLNVVEEFHQTKECNMDLINTEDTVEGVEDLIDIDMLLDDDNFIPIAFH* 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g1039 1047 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 195 - -
Lan19g1039 1047 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 195 1046 - -
Lan19g1039 1047 Gene3D - 871 918 - -
Lan19g1039 1047 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 195 1046 - -
Lan19g1039 1047 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 195 - -
Lan19g1039 1047 SUPERFAMILY Ankyrin repeat 644 754 IPR036770 -
Lan19g1039 1047 ProSiteProfiles IQ motif profile. 872 900 IPR000048 GO:0005515
Lan19g1039 1047 MobiDBLite consensus disorder prediction 145 209 - -
Lan19g1039 1047 Pfam Ankyrin repeats (3 copies) 636 719 IPR002110 GO:0005515
Lan19g1039 1047 ProSiteProfiles Ankyrin repeat region circular profile. 693 719 - -
Lan19g1039 1047 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Lan19g1039 1047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 871 921 IPR027417 -
Lan19g1039 1047 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Lan19g1039 1047 Pfam IPT/TIG domain 461 539 IPR002909 -
Lan19g1039 1047 ProSiteProfiles Ankyrin repeat profile. 693 725 IPR002110 GO:0005515
Lan19g1039 1047 SMART ANK_2a 693 722 IPR002110 GO:0005515
Lan19g1039 1047 SMART ANK_2a 660 689 IPR002110 GO:0005515
Lan19g1039 1047 SMART ANK_2a 732 761 IPR002110 GO:0005515
Lan19g1039 1047 ProSiteProfiles IQ motif profile. 894 918 IPR000048 GO:0005515
Lan19g1039 1047 Gene3D - 609 755 IPR036770 -
Lan19g1039 1047 MobiDBLite consensus disorder prediction 145 215 - -
Lan19g1039 1047 Gene3D Immunoglobulins 454 550 IPR013783 -
Lan19g1039 1047 SMART iq_5 893 915 IPR000048 GO:0005515
Lan19g1039 1047 SMART iq_5 870 892 IPR000048 GO:0005515
Lan19g1039 1047 SUPERFAMILY E set domains 461 547 IPR014756 -
Lan19g1039 1047 SMART CG_1_2 18 136 IPR005559 GO:0003677
Lan19g1039 1047 Pfam IQ calmodulin-binding motif 873 891 IPR000048 GO:0005515
Lan19g1039 1047 Pfam IQ calmodulin-binding motif 896 915 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g1039 Lan-Chr19 17621810 17631982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g1039 1 1023 CAMTA Transcription Factor Family AT5G64220 51.461 0.0 1010
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lan19g1039 CG-1 1.9e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0748 4 9665565 9674715 Lan19g1039 19 17621810 17631982 LSH
Lan19g1039 19 17621810 17631982 Lan16g0057 16 320988 329462 LSH