Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g1038 ATGGATAGTTTCTGTTGCTTCAGCCCTCAGGCGGCTGGAGGGCGTTCTTCTTCTATCTCTGGCAAGGGCAAGAGCTATAAGAGCCCAGTCAAGTATGGCTTTAGCCTGGTTAAAGGGAAAGCAAACCACCCGATGGAGGACTATCATGTCGCAAAATTTGTCACGCTCAATGGCGAAGAACTAGGACTTTTTGCTATTTATGATGGACACTTAGGAGACACTGTACCCGCTTATTTACAAAAGCATCTCTTTTCTAATATATTGAAGGAAGATGAGTTCTGGACTGATCCAAGCAGTTCTATCATCAAAGCTTATGAAACAACAGACCAGGCCGTTCTTTCTCACGATCCTGATTTAGGGCGAGGAGGATCGACTGCAGTGACTGCAATTCTTATAAATAATCAGAAACTATGGGTAGCAAATGTTGGAGATTCACGAGCGGTTCTGTCAAAGGGAGGGGTGGCCATTCAGATGAGTATCGATCATGAGCCCAATACTGAAAGGGGTTTCATTGAGAACAAAGGCGGCTTTGTCTCAAACCTTCCAGGAGATGTTGCAAGAGTGAACGGGCAGCTTGCAGTTTCTCGAGCATTCGGAGACAAAAACCTCAAGTCACACTTGCGAGCTGATCCTGACGTAGATCAAGATGATATTGACTCGGATACTGAGCTTTTGATACTTGCTAGTGATGGTGTATGGAAGGTAATGGCAAATCAAGAAGCAGTTGATATTGCAAGAAGGATAAGAGATCCACAAAAAGCAGCAAAACAACTAGTTGATGAGGCATTGGACAGAGAGAGTAAAGATGATATATCTTGCATTGTAGTTCGTTTCAAGGCATGA 843 0.4389 MDSFCCFSPQAAGGRSSSISGKGKSYKSPVKYGFSLVKGKANHPMEDYHVAKFVTLNGEELGLFAIYDGHLGDTVPAYLQKHLFSNILKEDEFWTDPSSSIIKAYETTDQAVLSHDPDLGRGGSTAVTAILINNQKLWVANVGDSRAVLSKGGVAIQMSIDHEPNTERGFIENKGGFVSNLPGDVARVNGQLAVSRAFGDKNLKSHLRADPDVDQDDIDSDTELLILASDGVWKVMANQEAVDIARRIRDPQKAAKQLVDEALDRESKDDISCIVVRFKA* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g1038 280 Pfam Protein phosphatase 2C 40 271 IPR001932 -
Lan19g1038 280 PANTHER PROTEIN PHOSPHATASE 2C 7 279 IPR015655 GO:0004722|GO:0006470
Lan19g1038 280 ProSiteProfiles PPM-type phosphatase domain profile. 31 278 IPR001932 -
Lan19g1038 280 SUPERFAMILY PP2C-like 25 279 IPR036457 -
Lan19g1038 280 SMART PP2C_4 27 276 IPR001932 -
Lan19g1038 280 CDD PP2Cc 30 278 IPR001932 -
Lan19g1038 280 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 7 279 - -
Lan19g1038 280 Gene3D - 26 280 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g1038 Lan-Chr19 17613767 17618079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g1038 1 279 PP2C-type Phosphatase Gene Family AT1G22280 70.383 1.71e-145 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g1038 K17506 - gmx:100787659 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0747 4 9659214 9663697 Lan19g1038 19 17613767 17618079 LSH
Lan17g0637 17 5506279 5511745 Lan19g1038 19 17613767 17618079 PCT
Lan19g1038 19 17613767 17618079 Lan17g0637 17 5506279 5511745 PCT