Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g1022 ATGTCCCTCACCGATTCCACGAAGAAGAAGAAGAAATCAAGCGACAAATCCGATTCCATCGATGATTTCACGATCAAACCCCAAAGCTTCACTCCTTCAATCGACACTTCGAATTGGCCAATCCTGTTGAAAAACTATGACCGTCTCAACGTTCGTACCGGTCACTACACTCCTCTCCCTTCCGGTTACTCACCATTGAAACGACCCATTGCTGAATACCTGAAATACGGTGTTATCAATCTCGACAAGCCCGCTAACCCTTCCTCTCACGAGGTTGTTGCATGGATCAAGCGAATTATTCGTGTCGAGAAAACCGGTCACAGCGGTACTCTTGATCCTAAGGTTACTGGTAATTTAATTGTCTGTATTGATCGGGCTACGCGGTTGGTTAAGTCTCAGCAGGGAGCTGGGAAGGAATATGTTTGTATTGCTCGGCTTCATTCTGCGGTCCCGGATGTCGCGAAAGTGGCGCGTGCTCTCGAGACGCTTACTGGAGCTGTTTTCCAGCGTCCTCCGCTTATATCGGCGGTTAAGAGACAGCTCAGGATTAGGACTATTTATGAGAGTAAGTTGCTTGAGTATGATGCTGATAAGCATTTGGTTGTGTTTTGGATTTCGTGTGAGGCTGGTACTTATGTTAGGACAATGTGTGTTCATTTGGGTTTGGTTCTTGGTGTGGGTGCTCATATGCAAGAGCTTAGGAGGGTTAGGAGTGGGATTATGGGTGAGAAGGATAATATGGTAACTATGCATGATGTTATTGATGCTCAATGGGTTTATGATAATTATAGGGATGAGACTTATCTTAGGAGGGTTGTTATGCCGCTCGAGGTTTTGTTGACTAGTTATAAGAGGTTGGTTGTTAAGGATTCTGCTGTTAATGCTATATGCTATGGTGCGAAGCTCATGATTCCGGGGTTGCTTCGGTTTGAGAATGATGTTGAGGTTGGGGAGGAGGTTGTGCTTATGACTACTAAAGGTGAGGCTATTGCGCTTGGGATTGCTGAGATGACTACTGCTGTTATGGCTACTTGTGATCATGGTGTGGTTGCTAAGATCAAGAGGGTTGTCATGGATAGGGATACTTATCCGAGGAAATGGGGTTTGGGACCCAAGGCTTCGTTGAAGAAGAAGTTGATTGCTGAAGGGAAGCTTGATAAGCGTGGGAAGCCTACTGCTGATACTCCACAAGAGTGGCTCAGGAATGTTGTTTTGCCGACGGGTGGGGATAGTGTTGTTGCTAGTTTGGCTGCTGCTCCCGAAGGCAAGGCTGTGGGAGATGTGAAGGCTGAGAAGGGAGAAGATGGAGAAGGGCGCAAAAGGAAGAATGATGAAAGTGGTGATGTCCTAGCTACCCCTCCTGCTAAGAAGAAGGTGAAAGCGGATCAAGATGAAGAGGCTGAAGTAGAGAAGTCAGAGAAGAAGAAGAAGAAAAAGAAGGATAAAGAGAATGGGGATGCTCCAGCTTCAGATGAGGAGAAAAGTGTAAAAGAGAAGAAAAAGAAGAAGGACAAGAAGGAAAAGGTTGAAGAGGATTCACCAGATGTGGACAAGTCTGAGAAGAAAAAGAAGAAGAAAAAAGACAAAGAGAATGAAGATAATGCTGCTGAAGTAACAAATGGAAAGGATGAAGGGAAAGCTGATCGGAGCGAAAAGAAGCATAAGAAAAAGAAAAACAAGGATGCTGATGAAGAGTAG 1698 0.4517 MSLTDSTKKKKKSSDKSDSIDDFTIKPQSFTPSIDTSNWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPIAEYLKYGVINLDKPANPSSHEVVAWIKRIIRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTMCVHLGLVLGVGAHMQELRRVRSGIMGEKDNMVTMHDVIDAQWVYDNYRDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDVEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPKASLKKKLIAEGKLDKRGKPTADTPQEWLRNVVLPTGGDSVVASLAAAPEGKAVGDVKAEKGEDGEGRKRKNDESGDVLATPPAKKKVKADQDEEAEVEKSEKKKKKKKDKENGDAPASDEEKSVKEKKKKKDKKEKVEEDSPDVDKSEKKKKKKKDKENEDNAAEVTNGKDEGKADRSEKKHKKKKNKDADEE* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g1022 565 SUPERFAMILY PUA domain-like 283 364 IPR015947 -
Lan19g1022 565 SMART DKCLD_2 35 93 IPR012960 -
Lan19g1022 565 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4 17 564 - -
Lan19g1022 565 ProSiteProfiles PUA domain profile. 283 358 - -
Lan19g1022 565 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 17 564 IPR004802 GO:0006396
Lan19g1022 565 Coils Coil 492 512 - -
Lan19g1022 565 MobiDBLite consensus disorder prediction 423 565 - -
Lan19g1022 565 TIGRFAM unchar_dom_2: uncharacterized domain 2 277 355 IPR004521 GO:0003723
Lan19g1022 565 Coils Coil 462 482 - -
Lan19g1022 565 SMART pua_5 284 358 IPR002478 GO:0003723
Lan19g1022 565 CDD PseudoU_synth_hDyskerin 75 257 - -
Lan19g1022 565 Pfam PUA domain 284 356 IPR002478 GO:0003723
Lan19g1022 565 Gene3D PUA domain 36 367 IPR036974 GO:0003723
Lan19g1022 565 Pfam tRNA pseudouridylate synthase B C-terminal domain 214 280 IPR032819 -
Lan19g1022 565 SUPERFAMILY Pseudouridine synthase 36 281 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lan19g1022 565 TIGRFAM CBF5: putative rRNA pseudouridine synthase 43 368 IPR004802 GO:0006396
Lan19g1022 565 MobiDBLite consensus disorder prediction 1 22 - -
Lan19g1022 565 MobiDBLite consensus disorder prediction 455 550 - -
Lan19g1022 565 Pfam TruB family pseudouridylate synthase (N terminal domain) 97 213 IPR002501 GO:0006396
Lan19g1022 565 Pfam DKCLD (NUC011) domain 36 93 IPR012960 -
Lan19g1022 565 MobiDBLite consensus disorder prediction 425 447 - -
Lan19g1022 565 Gene3D Pseudouridine synthase 69 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g1022 Lan-Chr19 17521166 17523203 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g1022 7 457 NAC Transcription Factor Family AT3G57150 82.198 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g1022 K11131 - pvy:116114001 793.112