Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g1017 ATGGGGAGAGGAAAAATTGCAATTAGAAGAATAGATAACACTACAAGCCGTCAAGTAACTTTCTCAAAGAGAAGAAATGGATTGCTGAAAAAAGCTAAAGAATTATCCATTTTATGTGATGCTGAAGTTGGATTGATTGTGTTTTCCAGCACTGGAAAACTTTATGATTATGCTAGTACCAGCATGAAATCTGTTCTTGAACGTTACAAAAAGCTAAAAGAGGAGAGTTATCAGCAAATGAATCCTACTTTAGAAATCAAGTTTTGGCAGAGAGAAGCAGCAAGCTTGAGGCAGCAACTGCAGTACTTGCAAGAATGCCACAGCAGGCAACTGATGGGAGAACAACTTTCTGGTTTGGGTATTAAAGAGCTGCAAAATTTGGAAAACCAACTGGAGATGAGTTTAAGGGGTGTTCGTGTGAAAAAGGATGAAATTTTGACGGACGAGATCAACGAACTACATCGAAAGGGAAATCTCGTTCATCAAGAAAATGTAGAACTCCATAAAAAGATGGACTTTGTCCATAAAGAAAATGCCAAGCTACAGAAGAAGGTTTTTGAAGCGGGTGTAAATGAAGAAAATGTGGCATCGGACCCTCCCTACACTATCACAGATGGGTATGATTTACATGCTCCTATCAGTCTCCAGCTGAGCCAGTCACGAACTCAATACAGTCAACTACCAGCCAAAGCAATAAAACTGGGGTATTCCCTCAAACTAATAATATAA 729 0.3909 MGRGKIAIRRIDNTTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYDYASTSMKSVLERYKKLKEESYQQMNPTLEIKFWQREAASLRQQLQYLQECHSRQLMGEQLSGLGIKELQNLENQLEMSLRGVRVKKDEILTDEINELHRKGNLVHQENVELHKKMDFVHKENAKLQKKVFEAGVNEENVASDPPYTITDGYDLHAPISLQLSQSRTQYSQLPAKAIKLGYSLKLII* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g1017 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan19g1017 242 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 242 - -
Lan19g1017 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan19g1017 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan19g1017 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan19g1017 242 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan19g1017 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lan19g1017 242 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Lan19g1017 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan19g1017 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan19g1017 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 242 - -
Lan19g1017 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Lan19g1017 242 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Lan19g1017 242 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g1017 Lan-Chr19 17466810 17475253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g1017 1 240 MADS-box Gene Family AT2G14210 61.224 6.22e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan19g1017 K-box 1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g1017 K09264 - gmx:100808145 375.555