Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g1007 ATGTTTGAGTTTTGTCTTTCACTAAAAAGAAGGCTTCAATGCAAACCACATCCAAAACAAGTTCATGATCCAAAGCAAAGTAATAATAATGCTCAAAGAACAAAGTCAGGTTTAGAAGGTTCTCATAGAAGAACAAGGTCATATACACCTTCAAGGATAGTTCATAATGTTGATTACAATGAAGGAAATATGTCTAAGGATTATTATGATGGTCCTTCAATTTTGACATGTGATAAATGTGGTGAGAAACTCAAAAATCATGTAGCTGTTGAAGCACACCATATTTCTGAGCATTCAGTCAGTGAACTTCAAGAAGATTCATCCAGACAGATTGTAGAAACAATATGCGGAAAAACCTCGACGAATTCTGAAAACATGTCAGGGGAGATTGATTGTATATTAAAAGTACAGAACAAAGCAAAAACTCTTGAATGCTTTGAGGAATACAGAGAAATGGTTAAGAATATGGCTGAGAAGCTACAGAAGAAGCATCCGCGTTGCGTGGCTGACGGAAATGAACTTTTAAGGTTTTATGGCACAACTATTGCATGCTCTCTTGGAAGAAATAGTTCTTATAGTTTATGCACTTTAGAGTATTGTGGTATATGCCAAATTTTAAGGCAAGGTTTCTCACCAAACAAGGAGTTTCAAGGTGCATTAGGGGTATACACCACTTCTACATGTGGAAAAGCCTTTGATTCTATCATGTTATGTGATGTGAGACCATTTTTAAGAAAATCAGTGATAGTGTGCAGAGTTATAGCAGGTAGAGTTTCTAGTAGTTCTCTTGAAGAAACTCAAGAAAAAGTTGATTCTTTGTCAGAAAAAATAAGTGGTCATTCAGATATTGAAGAACTCTATGTATTGAATCCCAATGCATTGCTTCCTTGCTTTGTGTTAATCTTCAAACAACAAACAATGGCAGTTAAAAGGTTCAATTCAAGCTTAAGAAAAAGATTTTGA 963 0.3499 MFEFCLSLKRRLQCKPHPKQVHDPKQSNNNAQRTKSGLEGSHRRTRSYTPSRIVHNVDYNEGNMSKDYYDGPSILTCDKCGEKLKNHVAVEAHHISEHSVSELQEDSSRQIVETICGKTSTNSENMSGEIDCILKVQNKAKTLECFEEYREMVKNMAEKLQKKHPRCVADGNELLRFYGTTIACSLGRNSSYSLCTLEYCGICQILRQGFSPNKEFQGALGVYTTSTCGKAFDSIMLCDVRPFLRKSVIVCRVIAGRVSSSSLEETQEKVDSLSEKISGHSDIEELYVLNPNALLPCFVLIFKQQTMAVKRFNSSLRKRF* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g1007 320 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 70 304 - -
Lan19g1007 320 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 70 304 - -
Lan19g1007 320 Coils Coil 263 283 - -
Lan19g1007 320 MobiDBLite consensus disorder prediction 16 50 - -
Lan19g1007 320 SUPERFAMILY ADP-ribosylation 105 304 - -
Lan19g1007 320 Coils Coil 143 163 - -
Lan19g1007 320 Gene3D - 90 308 - -
Lan19g1007 320 ProSitePatterns Zinc finger C2H2 type domain signature. 77 98 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g1007 Lan-Chr19 17382019 17383958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g1007 73 303 C2H2 Transcription Factor Family AT5G54630 54.508 1.08e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan19g1007 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g1007 - - gmx:100792577 363.999