Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan19g0997 | ATGATAATGGAGAGTGAGGTACCTGAGCACTTGAAATGTCCAATTTCACTTGAAATTATGTCTGACCCTGTCATCCTCTCTTCTGGTCACACCTTCGACCGTTCCTCTATTCAACGTTGGTTTGATTCTGGTCACTTTACTTGTCCTATTACCAAACTACCCCTCCCTCTTCATTCTCCTCTCATCCCCAACCACGCCCTTCGCACCTTAATTTCCACTTTTACCCCTACTCCCCCACTCACCCACCACCATGAAACCCTAATCTCCTCCCTCGCTTCTCCCTCTTCCTCCCTCCACTCCAAGCATGACTCGCTCCGCCACCTCACTCGCCTCTCCAAGCGTGACGCACTCTTCCGCCGCCGTATAACTGAATCTGGTGTTGTTCCGGTTGTGCTCTCTTGCATTGACGATGACTTGCTTCGTGAGAAAGCTCTCTCGCTTCTCCTTAATCTCAGTCTTGATGATGATAATAAGGTCGGACTTGTCGCCGAGGGCGTTGTTCGCCGCGTTGTTGCGGTTCTGATTGGTGGCTCGTCGGATTGTCGTGCGGTGGCGGCTACGTTGGTGACGAGTTTGGCGGTTGTGGAAGTTAACAAGGCGACAATTGGCGCGTACACTCACGCGATTGGTGCTCTTGTTTCTATCGTTAGGAGTGGGAAAGGGAGGGAGAAGAAAGAAGCTGCTACGGCGCTTTATGCACTTTGTTCTTTTCCGGATAATCGGAGAAGAGCGGTGGATTGTGGTGCCGTGCCGGTTTTGCTTCAGAGTGCTGATTCCGGTCTCGAGAGAGCGGTGGAAGTGATTGGGCTTTTGGCGAAGTGTAAAGAAGGGAGGGAGCAGATTGAGAAATTCGATGGTTGTGTGAGGATTCTGGTTCGGGTTTTGAGGAATGGAAGTTCAAAAGGGATTCAGTATGCTTTGCTTTCTCTCAATTCACTATGTTGTAACAGTGATGGAATTGTTGAAGAGGCTATTGAAGAAGGGGTTTTGGAAATTTGTGTGGGGTTGTTAGAGGTTGATAATGATAAGATTAGGAGGAATGCGTCGATTTTGATTCAGGCCCTGCGTAGCAATAGACGCGGTGTGAATTGTTGA | 1095 | 0.4922 | MIMESEVPEHLKCPISLEIMSDPVILSSGHTFDRSSIQRWFDSGHFTCPITKLPLPLHSPLIPNHALRTLISTFTPTPPLTHHHETLISSLASPSSSLHSKHDSLRHLTRLSKRDALFRRRITESGVVPVVLSCIDDDLLREKALSLLLNLSLDDDNKVGLVAEGVVRRVVAVLIGGSSDCRAVAATLVTSLAVVEVNKATIGAYTHAIGALVSIVRSGKGREKKEAATALYALCSFPDNRRRAVDCGAVPVLLQSADSGLERAVEVIGLLAKCKEGREQIEKFDGCVRILVRVLRNGSSKGIQYALLSLNSLCCNSDGIVEEAIEEGVLEICVGLLEVDNDKIRRNASILIQALRSNRRGVNC* | 365 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan19g0997 | 364 | SMART | arm_5 | 115 | 153 | IPR000225 | GO:0005515 | |
| Lan19g0997 | 364 | SMART | arm_5 | 316 | 357 | IPR000225 | GO:0005515 | |
| Lan19g0997 | 364 | SMART | arm_5 | 154 | 194 | IPR000225 | GO:0005515 | |
| Lan19g0997 | 364 | SMART | arm_5 | 274 | 315 | IPR000225 | GO:0005515 | |
| Lan19g0997 | 364 | SMART | arm_5 | 237 | 273 | IPR000225 | GO:0005515 | |
| Lan19g0997 | 364 | ProSiteProfiles | U-box domain profile. | 6 | 81 | IPR003613 | GO:0004842|GO:0016567 | |
| Lan19g0997 | 364 | SUPERFAMILY | RING/U-box | 4 | 75 | - | - | |
| Lan19g0997 | 364 | Pfam | U-box domain | 7 | 75 | IPR003613 | GO:0004842|GO:0016567 | |
| Lan19g0997 | 364 | SUPERFAMILY | ARM repeat | 85 | 358 | IPR016024 | - | |
| Lan19g0997 | 364 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 76 | IPR013083 | - | |
| Lan19g0997 | 364 | PANTHER | RING-TYPE E3 UBIQUITIN TRANSFERASE | 1 | 359 | - | - | |
| Lan19g0997 | 364 | Gene3D | - | 263 | 359 | IPR011989 | - | |
| Lan19g0997 | 364 | Gene3D | - | 80 | 262 | IPR011989 | - | |
| Lan19g0997 | 364 | SMART | Ubox_2 | 10 | 74 | IPR003613 | GO:0004842|GO:0016567 | |
| Lan19g0997 | 364 | CDD | RING-Ubox_PUB | 13 | 52 | IPR045210 | - | |
| Lan19g0997 | 364 | PANTHER | U BOX DOMAIN-CONTAINING | 1 | 359 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan19g0997 | Lan-Chr19 | 17300134 | 17301672 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan19g0997 | 3 | 355 | U-box Gene Family | AT4G21350 | 61.853 | 1.16e-147 | 420 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan19g0997 | - | - | vvi:100855109 | 444.891 |