Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0982 ATGGAAAGAAAATCAACGGAGCAAGAAGAGGAGCCTGTACCGGAAAACCTCCGTTGCAGCCGTACCGACGGCCGGCAATGGCGGTGCCGGCGGAGAGTGTTGGAAGGTTTGAAGCTTTGTGAGAATCACTACCTTCAAGGTCGTCATCGCCAGAACAAGGAGAAGGTACCTGAATCACTCAAGCTTCAGAGAAAAAGCACCAACAACAACAGTAGCAATCAAAACGGCGTCGTTTCGGAGAACGGTGAAATTAGGGCAAAATTGGTGAAGAAGAAGAAGAGGAAGCAAAATTCGGATGATGCAACTGGTTCTTCGGGGAAGAAGAGGAAAAACAGTGATATAAGGGTTGAATTGTTAACGATGGTTTTGGAGAGGGAGATTCAGAAAACAAAGAAGAAGAAGAAGAAGAAGAAGAAAACAAAGGGAAAGACAAAGAAAAATCAGAGAGAGAAGAAGAGGAATGTTATGGAAGAGGGAGAAGAAGATGATGATGATGAATTGTGTTATAGTGAGGGAGAGTTGAGAAAAGAATTGCCAAATGGTATTATGGAAATTGCTCCTGCTTCTTCAATGCACAATGTGGGTTCTTATTCTGATGTTAAAGTTTCGGACTTCGATCATAATAGATCACTTGCACTTACGACTCGCCGCTTCAGGTCCAAGAATGTTGATAGGAGCATCAATGTTGTTTCATATGGAAGGAACTTGAAGAAGGGTAAGAGGAAGAAGTGTCATTGGTGCAAGAGCATTGATTCATGGAATCTTATAATGTGTTCTGGCTGCCAGAAGGAGTTCTTCTGCGTGGACTGCATTAAAGAACGGTATTTTGAAACTGAAAATGAAGTTAAGATGGCATGTCCAGTTTGCCGAGGAACTTGCACTTGCAAAGATTGTTTGGCAAGTCAAGGCAGAGACAGTGAAAGTAAGGAATATTTGGATGGTAAAAGCAGAGTTGATCAAATATTGCATTTTCATTATTTGATATGTATGCTTCTCCCTGTACTAAAACAAATAAGTGAAGACCAGCACACTGAGCTAGAAACAGAAGCGAAAATTAAAGGGAAAAGAGTTTCTGATATTCTCATCAAGCAGGTCGAATTTGGCTGCAATGAGGAAAATTACTGCAATCACTGCAAAACACCAATTTTGGATCTTCATAGAAGCTGCCTTAGTTGTTCCTATAGCCTTTGCTTAAGTTGTTGCCACAAATTAAGCCAAGGAGGCACCTCTGAAGAAATTACCTCTTCGATGTCCAAGCTGCCTGACAAAATGAACAATTGCATTGCCAGTGAAAGCCACCTTTCAGATGATAAAACCAGTTCTAGTAGCAATTTAACTGTTACTTCGATATTGCCTGAGTGGACGGCTTGTAATGGTACAGACAGTGTATCATGCCCTCCTACAGAGCTAGGTGGTTGTGGTGATAGCCACCTCGATTTGAGATGTGTTTTTCCATTAAGTTGGATCAATGAGATGGAAGTAAAGGCAGAAGAGATAGCATGCAGCTATGACTTTCCTGAAACTTTGGATAAAAATTCAAGATGCTCAATGTGTAATGACAAAGATCATGAACCTAATGGAGATTTGCAATTGCAAGAAGCGGCTCAAAGAGAAGATTGGAATGATAATTGCTTGTTTTACCCAACAGTTTATGACATCAGAAGTGATCATTTAGATCACTTCCAGAAACACTGGGGAAAAGGCCATCCTGTAGTAGTGCGAGATGTGCTCCATAATACATCAAACATCAGTTGGGATCCACTGGTAATGTTCTGCGCTTATCTTGAGAGGTGCATTACAAGATATGAGAATAATAAGGACCAACTTGAAGCTTGTTTGGATTGGTGTGAGGTGGAAATTAACATTAGGCAGTATTTTAGTGGATCTCTTCAATATCGGTCTCAGAAAAACACTTGGCATGAGATGCTAAAACTAAAGGGGTGGTTGTCTTCCCAGATGTTCAAAGAACAGTTTCCAGCTCACTTTGCTGAAGTAATTAATGCTCTACCAGTTCGAGAATACATGAACCCCATGTCTGGTCTTCTTAATGTAGCTGCAAATTTGCCACAAGGGAGTTCAAAACATGACATGGGACCATATGTCTATTTTTCATATGACTGTGCTGATAAAGAAGCTGTTTCTGTGACTAAGCTCTGTTATGACTCATATGATGTGGTTAATATTATGGCACATACCTCAGATGGCCCTCTGTCTGCAGAACAGCTTAATAAAATAAGAAGGCTATTGAAAAAACACAAATCTCTATGTCAAAAGGAGTCTTCTAAAATTACTACAGACAACGCAGAAGACACGGAACAAAAAGATTTGAAAAGTATGGTAAGAAACAGAAAGGACTTCTTCAGAAGAGTCAACAGAACATCTAGCATATCTACTGAAGTCAGAACAGTGGGTAGTCAGTGTTTAGATACCAATATTTCTGCAGATGGAGAATGTAGTTCGAATTCTGATACTGAAAAAGTACAAAGCTCTTCAACTCTCAACGGGACAATTCAATGCGCCGAAATTTCTCCAAATCGCAATCCTGGAAATCTCCTTGAAAATACAGTCACTGATAAAAGTAAGATGCTTACAGAGAATTATTGTGCCCAGTGGGATATCTTTCGAAGAGAAGATGTACCGAAGCTCTTAGAATACCTTAAAATACACCATGATGAATTTTCTTATATGGATGAATATCATGAGAAGATGGTTCATCCAATTCTAGATCAGAACTTCTTTCTTGACAATACTCACAAAATGAGACTAAAAGAGGAGTTCAAAATTGAACCATGGACTTTCAAGCAACGTGTTGGAGAAGCTGTCATCATTCCTGCTGGTTGTCCATACCAGATTAGAAATGCTAAGTGTTGTGTTCATGTGGTACTGGAATTTATGTCTCCTGAGAATGTTACTGAATGTATCAAATTGGTTGATGAGGTCCGTCTACTTCCGAAAGACCATAAAGCAAAAGTAGACAAGCTGGAGGTGAAGAAAATGGCCCTTAATAGCGTTAGTACAGCAATTAAAGAAATAAGTGAGCTTACATGCAGAACATGA 3057 0.3978 MERKSTEQEEEPVPENLRCSRTDGRQWRCRRRVLEGLKLCENHYLQGRHRQNKEKVPESLKLQRKSTNNNSSNQNGVVSENGEIRAKLVKKKKRKQNSDDATGSSGKKRKNSDIRVELLTMVLEREIQKTKKKKKKKKKTKGKTKKNQREKKRNVMEEGEEDDDDELCYSEGELRKELPNGIMEIAPASSMHNVGSYSDVKVSDFDHNRSLALTTRRFRSKNVDRSINVVSYGRNLKKGKRKKCHWCKSIDSWNLIMCSGCQKEFFCVDCIKERYFETENEVKMACPVCRGTCTCKDCLASQGRDSESKEYLDGKSRVDQILHFHYLICMLLPVLKQISEDQHTELETEAKIKGKRVSDILIKQVEFGCNEENYCNHCKTPILDLHRSCLSCSYSLCLSCCHKLSQGGTSEEITSSMSKLPDKMNNCIASESHLSDDKTSSSSNLTVTSILPEWTACNGTDSVSCPPTELGGCGDSHLDLRCVFPLSWINEMEVKAEEIACSYDFPETLDKNSRCSMCNDKDHEPNGDLQLQEAAQREDWNDNCLFYPTVYDIRSDHLDHFQKHWGKGHPVVVRDVLHNTSNISWDPLVMFCAYLERCITRYENNKDQLEACLDWCEVEINIRQYFSGSLQYRSQKNTWHEMLKLKGWLSSQMFKEQFPAHFAEVINALPVREYMNPMSGLLNVAANLPQGSSKHDMGPYVYFSYDCADKEAVSVTKLCYDSYDVVNIMAHTSDGPLSAEQLNKIRRLLKKHKSLCQKESSKITTDNAEDTEQKDLKSMVRNRKDFFRRVNRTSSISTEVRTVGSQCLDTNISADGECSSNSDTEKVQSSSTLNGTIQCAEISPNRNPGNLLENTVTDKSKMLTENYCAQWDIFRREDVPKLLEYLKIHHDEFSYMDEYHEKMVHPILDQNFFLDNTHKMRLKEEFKIEPWTFKQRVGEAVIIPAGCPYQIRNAKCCVHVVLEFMSPENVTECIKLVDEVRLLPKDHKAKVDKLEVKKMALNSVSTAIKEISELTCRT* 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0982 1018 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 8 1017 IPR045109 GO:0032454|GO:0033169
Lan19g0982 1018 SMART cupin_9 658 981 IPR003347 -
Lan19g0982 1018 Gene3D Cupin 549 990 - -
Lan19g0982 1018 Pfam WRC 14 55 IPR014977 -
Lan19g0982 1018 MobiDBLite consensus disorder prediction 62 80 - -
Lan19g0982 1018 Pfam JmjC domain, hydroxylase 866 962 IPR003347 -
Lan19g0982 1018 ProSiteProfiles JmjC domain profile. 677 981 IPR003347 -
Lan19g0982 1018 MobiDBLite consensus disorder prediction 93 128 - -
Lan19g0982 1018 MobiDBLite consensus disorder prediction 129 149 - -
Lan19g0982 1018 MobiDBLite consensus disorder prediction 45 166 - -
Lan19g0982 1018 ProSiteProfiles WRC domain profile. 13 57 IPR014977 -
Lan19g0982 1018 PANTHER PROTEIN B160 8 1017 - -
Lan19g0982 1018 ProSiteProfiles Zinc finger RING-type profile. 244 290 IPR001841 -
Lan19g0982 1018 MobiDBLite consensus disorder prediction 45 61 - -
Lan19g0982 1018 MobiDBLite consensus disorder prediction 1 22 - -
Lan19g0982 1018 SUPERFAMILY Clavaminate synthase-like 558 1007 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0982 Lan-Chr19 17219833 17225876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0982 14 53 GRF Transcription Factor Family AT2G36400 55.000 6.04e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lan19g0982 JmjC 6.9e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0982 K15601 - gmx:100799234 1287.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0702 6 6191525 6198071 Lan19g0982 19 17219833 17225876 PCT
Lan19g0982 19 17219833 17225876 Lan6g0702 6 6191525 6198071 PCT