Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0979 ATGGAGCTTATACTTAACATGGGTAGAGTACCTTGTTGTGAGAAAAATGGTCTCAAGAAAGGGCCATGGACACCAGAAGAGGATCAGAAACTCATTGATTACATTCAGAAACATGGTTATGGTAACTGGAGGACACTCCCAAAGAATGCTGGGTTGCAAAGATGCGGAAAGAGTTGCCGTCTCCGGTGGACAAACTATCTCCGGCCAGATATAAAGAGAGGCCGGTTTACCTTAGAAGAGGAAGAGTCAATAATTCAGCTACATAGCATTCTTGGCAACAAGTGGTCTACCATTGCTTCACATTTACCGGGAAGAACTGACAATGAAATCAAGAACTATTGGAACACGCATATAAGAAAAAAGCTTCTGAGTATGGGAATTGATCCTGTGACACATAGTCCTAGACTTGACCTATTATACATCTCTTCCATTCTAAACTCATCTCTCTATGCTAATTCATCAAATTTCAACATCCAAAGGCTCCTTACTATGCAACCTATAGAGAACACAGAGCTTCTTAAATTGGCTTCTTCACTCTTATTTTCACAACAATGTGAAGACCAAAACTTGTGTGCTCAAAATGACCAATATAACCCTCAAATTCTGAACCAAATCCAATTTCAAAACCCGGTTCAACAAGTAGCTTGCACTGAATTGGTTGAACCAAATATGTCAAGTTTCACTGACCTTAGTTCCCAACAACATTCTTTACTAAATGATTGGCACAGAAATAATGGAACTTCTTTAAGTACATTTTCTGAGGACTATATCCCTCAATTATTATCAAGCTATAGTTATAGTAATTATAATTCTGATAATCAAAATCTTATGGATCCTCCATTGTCTGAAACTACAACCTTAAATTCCAACAATAGTAGCAACAAGAACTTCAGCTTTGCTTCAGTTCTATCCACACCTTCTTCAAGTCCCATAGAGCTAAATTCGAGTTCAACATTTATCAATGGGAGCATCACAGAGGATGAAAGAGAAAGCTATGGTAGTAGTAGTAACATGTTGAAATTTGAAATCCCAGAAATTTTAGATGTGAATGAGTTCATGTAA 1062 0.3748 MELILNMGRVPCCEKNGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFTLEEEESIIQLHSILGNKWSTIASHLPGRTDNEIKNYWNTHIRKKLLSMGIDPVTHSPRLDLLYISSILNSSLYANSSNFNIQRLLTMQPIENTELLKLASSLLFSQQCEDQNLCAQNDQYNPQILNQIQFQNPVQQVACTELVEPNMSSFTDLSSQQHSLLNDWHRNNGTSLSTFSEDYIPQLLSSYSYSNYNSDNQNLMDPPLSETTTLNSNNSSNKNFSFASVLSTPSSSPIELNSSSTFINGSITEDERESYGSSSNMLKFEIPEILDVNEFM* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0979 353 Gene3D - 75 122 - -
Lan19g0979 353 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Lan19g0979 353 Pfam Myb-like DNA-binding domain 73 117 IPR001005 -
Lan19g0979 353 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Lan19g0979 353 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 348 - -
Lan19g0979 353 SMART sant 19 69 IPR001005 -
Lan19g0979 353 SMART sant 72 120 IPR001005 -
Lan19g0979 353 SUPERFAMILY Homeodomain-like 17 114 IPR009057 -
Lan19g0979 353 CDD SANT 75 118 IPR001005 -
Lan19g0979 353 Gene3D - 19 72 - -
Lan19g0979 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Lan19g0979 353 CDD SANT 22 67 IPR001005 -
Lan19g0979 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Lan19g0979 353 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Lan19g0979 353 PANTHER TRANSCRIPTION FACTOR MYB41 7 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0979 Lan-Chr19 17200223 17203833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0979 7 353 MYB Transcription Factor Family AT4G21440 54.667 4.19e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan19g0979 Myb_DNA-binding 1.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0979 K09422 - gmx:778071 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0679 17 5918248 5920040 Lan19g0979 19 17200223 17203833 PCT
Lan19g0979 19 17200223 17203833 Lan17g0679 17 5918248 5920040 PCT