Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0977 ATGGAAACGACCTTGCCGGAAACATCCACCGCCGGAGACTCCAATCTCCGTCGTGCAATCGACCTCATTTCCTCCCTCATTTCCATTTCTCACTCCATCAGAGTCTTCGCCGGAAAATGGCAACTGATTCGTACGAAGCTCGAAGAGCTTCATTCAGCACTACTCACCGCCGAGAATTCCGATTCCGGCGAGAACCCATCACTCTCCGTCACACTCCGTTCGATTATGACCACCGCCGACGAGTGCCACGACCTCGCTCGCCGTTGCTCCGCCGTGTCCTACAGCGGGAAGTTACTGATGCAGAGTGATTTGGATGTAACGTTGGTGAAGTTCAACCACCACGTGAAGAAGCTTTCGGAGTTGTATGATACGGGTATTTTGATACGTAGCTACGCTCTCGTTGTATCAAAACCTTGTCTTGGTGCTTCAAAAGAGGATATGAGGTTTTACATAAGAGACCTTTTGACAAGGATGAAGATTGGTGATGTGGGTATGAAGAAGATGGCTTTGATTAACCTTCATGAGGTTGTGGTTGAAGATGATAGGTATGTGAAGGTTATTACGGAAGTTGTTGATGTTGTTCATGTTTTGGTTGAATTTCTTGGCTCTTCTGAGGTTGTGATTCAAGAAGAATCTGTAAAGGTTGTTGCTTTGATTGCTGGGTTTGTTGATTCTTCATATAAAGGGGTTTTGATTGGTGCTGGGGTTGTTGCTAATTTGATTAAGGTTTTGGAATGTGGGAGTGAGGTTGGAAAAGTTGGTGCTGCAAGGTGTTTGATGAAATTGACTAAGAATTCAGAAAATGCTTGGTCGGTTTCGGCTCATGGGGGTGTGAATGTTTTGTTGAGGATTTGTGGTAATGTTGATTCTAAAGGGGATTTGGTTGGTCCTGCTTGTGGGGTTTTGAGGAATCTTGTTGGTGTTGAAGAGATCAAGAGGTTTATGGTTGAAGAAGGCGCGGTTTCAACATTTATCAGGCTTTTTAGATCTAAAGATGAACCAATTCAGGTATGTGCAATTGAGTTCATTCAGGATATTGCATTTAAAGATGAATTGGTTAGGCAAATAGTTGTTAGTGAAGGTGGTGTTCGTGTTTTGTTGCGTGTTTTGGATCCTAAATTTTCTTATTCATCGAAAATCCGGGAGGTAGTAATGAGGGCTATTGAAAACTTGTGTTTTACTTCATCTACTTGTGTAACTACTTTGATGAGTTATGGATTTGTGGATCACTTGTTGTATTATGTTCGAAATGGAGAGGTTTCGGTTCAAGAGTCGGCCCTGAAAGTAACATTTAGATTGTGTGCAACATCAGAGGAAGCTAAGAAAGCACTAGGTGATGCTGGCTTCATCCCAGAGCTTGTTAAGTTTCTAAATGCGAAATCATTCGAGGTCCGCGAAATGGCAGCCGAGGCACTCTCTGGCATGGTTATGGTGCCTAGAAATAGAAAGAAATTTGTTCAAGAAGACCAAAATATCGCCCTTCTTCTCCGATTGATAGACCCCGGGGAGGGAAATTCAGGTAGCAAAAAGTTCTTAATCTCGATCTTAATGTCATTAACAAATTGCAATAGTGGGAGGAAAAAGATTATTAGTTCTAGTTATGCCAAGAACATAGAGAGGCTTGCAGAAAGTGATATTTGTTCTGATGCCAAGAGACTTGTAAAGAAGCTATCCACAAACAGATTCCACAGTATCTTGAGTAGAATCTGGCACTCATAA 1719 0.4241 METTLPETSTAGDSNLRRAIDLISSLISISHSIRVFAGKWQLIRTKLEELHSALLTAENSDSGENPSLSVTLRSIMTTADECHDLARRCSAVSYSGKLLMQSDLDVTLVKFNHHVKKLSELYDTGILIRSYALVVSKPCLGASKEDMRFYIRDLLTRMKIGDVGMKKMALINLHEVVVEDDRYVKVITEVVDVVHVLVEFLGSSEVVIQEESVKVVALIAGFVDSSYKGVLIGAGVVANLIKVLECGSEVGKVGAARCLMKLTKNSENAWSVSAHGGVNVLLRICGNVDSKGDLVGPACGVLRNLVGVEEIKRFMVEEGAVSTFIRLFRSKDEPIQVCAIEFIQDIAFKDELVRQIVVSEGGVRVLLRVLDPKFSYSSKIREVVMRAIENLCFTSSTCVTTLMSYGFVDHLLYYVRNGEVSVQESALKVTFRLCATSEEAKKALGDAGFIPELVKFLNAKSFEVREMAAEALSGMVMVPRNRKKFVQEDQNIALLLRLIDPGEGNSGSKKFLISILMSLTNCNSGRKKIISSSYAKNIERLAESDICSDAKRLVKKLSTNRFHSILSRIWHS* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0977 572 Gene3D - 150 563 IPR011989 -
Lan19g0977 572 Pfam Armadillo/beta-catenin-like repeat 438 473 IPR000225 GO:0005515
Lan19g0977 572 SMART arm_5 350 393 IPR000225 GO:0005515
Lan19g0977 572 SMART arm_5 224 264 IPR000225 GO:0005515
Lan19g0977 572 SMART arm_5 437 477 IPR000225 GO:0005515
Lan19g0977 572 SMART arm_5 308 348 IPR000225 GO:0005515
Lan19g0977 572 SMART arm_5 265 307 IPR000225 GO:0005515
Lan19g0977 572 SMART arm_5 183 221 IPR000225 GO:0005515
Lan19g0977 572 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 8 572 - -
Lan19g0977 572 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 8 572 - -
Lan19g0977 572 SUPERFAMILY ARM repeat 152 545 IPR016024 -
Lan19g0977 572 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 276 320 IPR000225 GO:0005515
Lan19g0977 572 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 319 361 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0977 Lan-Chr19 17183790 17185968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0977 196 426 U-box Gene Family AT2G23140 27.350 8.98e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0977 - - gmx:100809382 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0977 19 17183790 17185968 Lan16g0110 16 857661 859796 LSH
Lan18g0593 18 10896210 10898486 Lan19g0977 19 17183790 17185968 PCT
Lan19g0977 19 17183790 17185968 Lan18g0593 18 10896210 10898486 PCT