Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0972 ATGGCTTCAATTAGTTCTTCAAACTTGTTGTGCTTCAATCCTGACTGCAAAGAATTCAAATCCGAAAGACCTAACAAAGGTTGGAGACTCCGTAATGGTGAACTAGCTCAGCTTTGTGATCGATGCGGTTCTGCTTTTGAAGAAGGGAGATTCTGTGACATTTTTCACTCAAATGCTTCTGGTTGGAGGAATTGTGAGACTTGTAGGAAGGGGATTCATTGTGGATGTATTGTTTCAAGTCATGCCTTTGTGTTGTTGGATCCTGGAGGAATTGAATGCTTTGCATGTGCCCGCAAACATATTCTTTTGCCATCTAACCCAACATGGTCACCACCTTTTTCCCTTCAAAATCGATTATCTGAGAGACTTAGAGACCTGTCTGCAAAAAGTTGGAGTCAATTAGCTGGATCCGGGCCTGTACCATGGAAGCAAGCACCCAGTCTGTTCAATTCAATTTCTTCATCCGACATGTGCCCAGATGTGTCCCCTCTAGTTGGATTATCAAATGGCATTGATAAAATTTATGGCAATGAAAGGTTACTTGCCTCTTCCTTGGAGAAGAAAAATGAGGATTTGTCTGGAATGTCAATTAATTGGAGCACTAATTTTGGTCCACGGGAAATGATGCTTATGAATGGAATGAGGAATGAAGACAAATCAAGTTCATGTTTAAATATGTGTCAACAGCCTCCTTCTCTGAAGGACGATTTGTCCCTTCAACCATTTGCTCTGTCTGTACCTTATGCAACTCCAAATGAAAGAAATGGTCAAGTTGGGGTAGCAGGAAGTTATCCACATCAAACTACATCTCTTCCAGGAAAGCCATTTAGTGACACTATGCATTTAGGCCTGGACTCTTCAGGTGAAACTCAGGTTCGCAATGGACGACCTCGAGCCGATGCCCGAGGAAGAAACCAGTTACTGCCACGGTACTGGCCCAGGTGTACTGATCTGGAGCTACAGAAAATAACCATAGACTCTACTTCTGTAATTACTCCCTTATTTCAAAAGACCTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTCTAGTGCTTCCAAAAAAGTGTGCTGAGGCCTACTTCCCACCAATTTCCCACCCTGAAGGGTTGCCACTTAAAATCCTTGATGCTAAAGGAAAAGAATGGATATTTCAGTTTCGCTTCTGGCCCAACAATAACAGCAGAATGTATGTGTTAGAAGGTGTCACTCCCTGTATACAATCCATGCAGTTGCAAGCAGGTGATACAGTAACATTTAGCCGTCTGGAGCCAGAAGGGAGGTTGGTTATGGGATTTAGAAAGGCTTCAAGTGCTACACCCTCCGACCAGGACAATGAAACAAATAAGACAGGAAATGGATTTTCTGCACAGGATGAGGTCGAACTGGCTGATGCTAGTTCATGGTCTAAAATTGATAAGTCAGGATACATAGCAAAAGATGCACCAGGGGGCAAATCTTCTATGAGAAAGAGAAAAAACAGCATATTGGGTTCAAAAAGTAAACGCCTAAGGCTCGAAAATGAGGATGTAATAGAGCTGAAGATTACATGGCAAGAAGCTCAAGGCCTGCTCCGTCCCCCTCCTAGCCATGTTGCCAGCATTGTGGTGATTGAAGGTTTTGAATTTGAGGAATATGAGGATGCTCCAGTACTCGGGAAGCCAACAATTTTCACCACTGATAATATGGGTGAAAAGATCCAGTGGGCTCAATGTGAAGATTGTCTTAAGTGGCGTAAATTGCCTGCAAGTGCGCTTCTTACATCAAAGTGGACGTGTTCTGATAATTCGTGGGACCCAGAAAGATCTTCTTGTTCGGCTGCACAAGAGCTGACAGCAGAACAGCTTGAGAATATGCTACCCCCTTGTAGTTCAGCTTTTTCCAAGAAAATGAAGGCAGCCAAGCAGGATCCGGATAATGCTGAAGCTTTGGAGGGACTTGACACACTTGCAAATCTAGCTATCCTGGGAGAGGGTGAGGCGCTTCCCTCATCTTCCCAGGCCACGACTAAACACCCACGGCATAGACCGGGCTGCTCCTGCATTGTTTGCATCCAGCCTCCGAGTGGAAAGGGCCCCAAGCATAAGCAGACGTGCACATGTAATGTATGCTTAACTGTGAAGCGCCGTTTCCGTACCCTAATGTTACGCCGTGAGAAGAAACAGTCAGAAAGAGAAGCAGAGACAACACATAAAAAGCAGAAGCACAAGCATCCTCAGCCATTACCTTCATCCGAAATTTTGCTTGATGATGATTCCTTACCTTGTAGTAACACAGGTGATAGCAGCAGCCCAAACCAGAACAAGGATGGCAATGACGGTTCTGATGAAGATCCTGTCCAGATAAAATCGTCTACTTCGCCATTCAAAGGCCAAATTGACCTCAACATCCGGCCAGAGCGTGAAGAAGAGTTTTCACCGCTTTCAGATTCCAGTGGTATGATGAAGTTGCCCCATGATACTACTGATATGTATCCCAAGCAGCAGACTATGTTGAACTCTAGTACCGAAGACACATCACGAAGTCAGTCACAGAAGGTTGGAGATGGAGTGAGGGGTGAGAAACTTAGCAATGGTGTATCTCATGGCAGTAGTAGTGATAATAATGGTGATAAGGAACATGCTCAAGCTTTGCCTATGAATGTGTGA 2646 0.4456 MASISSSNLLCFNPDCKEFKSERPNKGWRLRNGELAQLCDRCGSAFEEGRFCDIFHSNASGWRNCETCRKGIHCGCIVSSHAFVLLDPGGIECFACARKHILLPSNPTWSPPFSLQNRLSERLRDLSAKSWSQLAGSGPVPWKQAPSLFNSISSSDMCPDVSPLVGLSNGIDKIYGNERLLASSLEKKNEDLSGMSINWSTNFGPREMMLMNGMRNEDKSSSCLNMCQQPPSLKDDLSLQPFALSVPYATPNERNGQVGVAGSYPHQTTSLPGKPFSDTMHLGLDSSGETQVRNGRPRADARGRNQLLPRYWPRCTDLELQKITIDSTSVITPLFQKTLSASDAGRIGRLVLPKKCAEAYFPPISHPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSATPSDQDNETNKTGNGFSAQDEVELADASSWSKIDKSGYIAKDAPGGKSSMRKRKNSILGSKSKRLRLENEDVIELKITWQEAQGLLRPPPSHVASIVVIEGFEFEEYEDAPVLGKPTIFTTDNMGEKIQWAQCEDCLKWRKLPASALLTSKWTCSDNSWDPERSSCSAAQELTAEQLENMLPPCSSAFSKKMKAAKQDPDNAEALEGLDTLANLAILGEGEALPSSSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEREAETTHKKQKHKHPQPLPSSEILLDDDSLPCSNTGDSSSPNQNKDGNDGSDEDPVQIKSSTSPFKGQIDLNIRPEREEEFSPLSDSSGMMKLPHDTTDMYPKQQTMLNSSTEDTSRSQSQKVGDGVRGEKLSNGVSHGSSSDNNGDKEHAQALPMNV* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0972 881 MobiDBLite consensus disorder prediction 857 871 - -
Lan19g0972 881 MobiDBLite consensus disorder prediction 715 881 - -
Lan19g0972 881 MobiDBLite consensus disorder prediction 777 791 - -
Lan19g0972 881 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 6 810 - -
Lan19g0972 881 Pfam B3 DNA binding domain 335 434 IPR003340 GO:0003677
Lan19g0972 881 MobiDBLite consensus disorder prediction 716 732 - -
Lan19g0972 881 SUPERFAMILY DNA-binding pseudobarrel domain 332 435 IPR015300 -
Lan19g0972 881 SMART B3_2 335 436 IPR003340 GO:0003677
Lan19g0972 881 Gene3D - 566 620 - -
Lan19g0972 881 ProSiteProfiles B3 DNA-binding domain profile. 335 436 IPR003340 GO:0003677
Lan19g0972 881 Pfam CW-type Zinc Finger 567 609 IPR011124 GO:0008270
Lan19g0972 881 MobiDBLite consensus disorder prediction 822 846 - -
Lan19g0972 881 CDD B3_DNA 333 434 IPR003340 GO:0003677
Lan19g0972 881 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 6 810 - -
Lan19g0972 881 MobiDBLite consensus disorder prediction 434 457 - -
Lan19g0972 881 ProSiteProfiles Zinc finger CW-type profile. 562 612 IPR011124 GO:0008270
Lan19g0972 881 MobiDBLite consensus disorder prediction 750 769 - -
Lan19g0972 881 Gene3D - 313 439 IPR015300 -
Lan19g0972 881 MobiDBLite consensus disorder prediction 436 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0972 Lan-Chr19 17131050 17139101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0972 237 720 B3 DNA Binding Superfamily AT4G32010 53.049 1.32e-162 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan19g0972 B3 1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0972 - - gmx:100807252 1472.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0710 4 9464572 9474000 Lan19g0972 19 17131050 17139101 LSH
Lan19g0972 19 17131050 17139101 Lan16g0114 16 888586 896839 LSH