Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0965 ATGGGGACGGAGGTGGTAGACAGGTGGGGCACCTGGGAGGAGCTCCTCCTTGGTGGGGCCGTTCTCCGCCATGGGACACGAAACTGGAACATAGTCGCCGCCGAACTCCGGTCACGAACTCTTTTCCCTTACACTTTTACCCCTGAGGTTTGTAAAGCCAAGTATGAGGACTTACAACAACAGTACTCTGGGAACATGGTTTGGTTTGAGGAGCTTAGGAAGAAAAGAGTAGAAGAGCTGAAGAGAGCTCTAGAGTTATCCGAAGATTCAATTGGGTCTCTTGAATCGAAGATTGAATCGCTAAAGGCTGGGAAGAAGAATGAGAAAAGAAATGATTGTCGTGTTGACAATGTGTTAGATAGTCCTGAATTACATATGCCTATGCCGGAATTGGAGAGGGTCGAATCTTCGACCAAAGAGATGTCAAAGGATGGACTATCTGCTGGGAGTTTCACACATGAAACCAGGACAAACTGGTCTCCTGAATGCCAGGTTCCAGCCGTGTCGGCTGAAGACGTGGAGACTAAGCTTGAAATTGAGCAAGACAAAGTTCGGAATGTAGATAAGTTGGCACATACTATATATGAAGTGCAAGGAGGGTATTTTAAAAAACGGAGAGGGAAGAGGAAGAGAAAGGAGTGTGGCAGAAATATTAAGGAAGCAAGTGTAGGAGAAAGTGACTTATTAGATTCAACCGATGTTCTATCTTGGTGTAAAGAAAGTTCTACCAGTAATTGTGGTGAACTTGCCAAATCTCGTGGTGTAGATGATCATAATAGAAACTCGAAAAGGGATGGAGTGGAACATGTTATGGAAATTTTAGATTCTATATTTGAAACCAAAGGTGCCTCTGCCTTCCGCCGAAGACTCGATAGTCAGAAGAGAGGAAGGTACAAGAAAATGATCCGAAGGCACATGGATTTCGACACTATAAGATCAAGAATTAGCAGCCAAACAATTAAGTCAGCTATAGAACTTTTCCGAGACTTGTTGCTACTCGCTAACAATGCTCTAGTCTTCTACTCGAAGAGCACTCGCGAATATAAATCTGCTCTTCTGCTTCGAGACCTTGTCGCCACAAAAACGAGGGAGAGTTTCAAGGATGTTAGAAGCAGCAAAGTTACTCAAACTGATTGGTCTATTAAATCACATGTACATAATAAAAAACCTCATGTGAATGTGAAACCAAGAAGTGTGAGGCCAGGTAACAGAAAAATTGTTGCAAATGCAGTAGTAGTTGGTGGCAACAATTCTGCATCATTGGTTACAGAAGGAACTAAGAAACCAAGCAAATCTGATTCACCATCTTCAGTGGAATCCTTACCTTTTAAGAAGAAAGCTTTCGGTAGACCGAAAAAAGTTGCGCGCGGAACTTCAGGTCAAAGGCCTGCATTACCAATGAAGGGAAAGAAAAGGGTTAGAACTAAGTGA 1431 0.4305 MGTEVVDRWGTWEELLLGGAVLRHGTRNWNIVAAELRSRTLFPYTFTPEVCKAKYEDLQQQYSGNMVWFEELRKKRVEELKRALELSEDSIGSLESKIESLKAGKKNEKRNDCRVDNVLDSPELHMPMPELERVESSTKEMSKDGLSAGSFTHETRTNWSPECQVPAVSAEDVETKLEIEQDKVRNVDKLAHTIYEVQGGYFKKRRGKRKRKECGRNIKEASVGESDLLDSTDVLSWCKESSTSNCGELAKSRGVDDHNRNSKRDGVEHVMEILDSIFETKGASAFRRRLDSQKRGRYKKMIRRHMDFDTIRSRISSQTIKSAIELFRDLLLLANNALVFYSKSTREYKSALLLRDLVATKTRESFKDVRSSKVTQTDWSIKSHVHNKKPHVNVKPRSVRPGNRKIVANAVVVGGNNSASLVTEGTKKPSKSDSPSSVESLPFKKKAFGRPKKVARGTSGQRPALPMKGKKRVRTK* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0965 476 CDD Bromodomain 272 361 - -
Lan19g0965 476 SUPERFAMILY Bromodomain 267 367 IPR036427 GO:0005515
Lan19g0965 476 Gene3D - 257 372 IPR036427 GO:0005515
Lan19g0965 476 MobiDBLite consensus disorder prediction 419 476 - -
Lan19g0965 476 MobiDBLite consensus disorder prediction 419 439 - -
Lan19g0965 476 SMART bromo_6 263 367 IPR001487 GO:0005515
Lan19g0965 476 Coils Coil 77 111 - -
Lan19g0965 476 MobiDBLite consensus disorder prediction 379 399 - -
Lan19g0965 476 PANTHER BROMODOMAIN PROTEIN 1 476 - -
Lan19g0965 476 Pfam Bromodomain 272 351 IPR001487 GO:0005515
Lan19g0965 476 ProSiteProfiles Bromodomain profile. 278 348 IPR001487 GO:0005515
Lan19g0965 476 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 1 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0965 Lan-Chr19 17035033 17038426 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lan19g0965 Bromodomain 8.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0965 - - gmx:100804245 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0700 4 9418172 9422121 Lan19g0965 19 17035033 17038426 LSH
Lan17g0685 17 6032420 6037594 Lan19g0965 19 17035033 17038426 PCT
Lan6g0708 6 6266784 6271986 Lan19g0965 19 17035033 17038426 PCT
Lan19g0965 19 17035033 17038426 Lan17g0685 17 6032420 6037594 PCT
Lan19g0965 19 17035033 17038426 Lan6g0708 6 6266784 6271986 PCT