Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0946 ATGTCTGACACCGAAAATCTCGCATCCTTTCGTTCTCCTTCATCCCCCGACGAGCCAATTTCTCGAGGATCTGCTCGTGAGAGTTTGAGGATGAGAAAGCGAGATGGAGAGAGGAAAACTTTTCATGACCGTCATCACAGAGACTATAGGGATAGTGGTTTTAATGGAAGGGGCAGATATGAAAGTTCTAATCGTCAGCAGAGCCGTGACTATGATAGGCATAATGATCGTTTTCGAGATGGAGAAACCAGACACAAATATGGAGAGCATAGATCAAGATCAAGGAGGGAACATATATCAAGATCCAGATCCCCTTCTCGTTCAGAGAGCAAAAGGACCTCTGGATTTGACATGGCACCACCTGCTTCAGGCGTGACACCTGCTGTTTCAGTTAACAATGCAGGGCAAATGCTGGGCATTACTAATATGATTCATGGAACTGCACAAAATTTGTCATCATTTGGGATGTCACAGATTGGAGCACTTTCCTTAATGCAAGTTCAACCAATGACACAACAGGCCACAAGGCACGCACGGCGAGTATATGTCGGTGGGCTTCCTCCTTTGATTAATGAACAGGTAATTGCATCATTCTTCAGCCAAGTCATGACTGCTGTTGGGGGAAATTCCGCTGGAGCAGGTGATTCTGTTGTCAATGTCTACATCAATCATGAGAAGAAATTTGCGTTTGTGGAGATGAGAACTGTCGAAGAAGCTAGTAATGCAATGGCATTAGATGGAATAGTATTTGAGGGTGTTGCTGTTCGGGTTCGTAGGCCATCAGATTATAACCCTTCATTAGCTGCAGCTCTCGGTCCTAGCCAACCAAGTCCATACCTTAATTTATCTGCTATTGGACTTGCTGTAGGTGCGATTGGTGCAATTGAGGGACTTGACCGCATTTTTGTGGGTGGGCTGCCATATTACTTTACTGAAGCACAAATAAGAGAATTGCTTCAATCTTTTGGTTCTCTTCGGGCTTTTGATCTCGTTAGGGATAAAGACACTGGAAATTCAAAAGGATATGGTTTCTGCATCTATCAGGATCCAGCAGTAACAGACATTGCTTGTGCCTCTCTCAATGGCCTTAAAATGGGTGATAAAACATTGACTGTAAGGCGTGCTACCGTCAGTGGACATTCTAAAACAGAACAAGACAGCATCCTTGCACGGGCACAGCAGCATATAGCTATCCAGAAATCAGTTTTGGAAGTTGGTGGGTTAAGTATTCCTGGAGTGGAAAGAGTTACAACAACAATTGATGAAAGCCCTACAAAAGTTGTATGCTTGACTGAGGCCATTACTACTGAACAATTGAACAATGATGAAGAGTATGATGAAATATTGGAAGACATGCGCGATGAATGCTGCAAATTTGGTACCTTGGTGAATGTTGTTATTCCTCGTCCAAATCAAAATGAAGAGCCAGCTTCAGGTGTTGGAAAGGTGTTCTTGGAGTACTCTGATAGTGCTGGTTCTTTAGCTGCAAAATCTGCACTAAATGGTAGGAAATTTGGGGGCAATACTGTGACTGCAGTTTATTATCCGGAAGAAAAATATCTTAGCATGGAGTATGATGTATGA 1584 0.4318 MSDTENLASFRSPSSPDEPISRGSARESLRMRKRDGERKTFHDRHHRDYRDSGFNGRGRYESSNRQQSRDYDRHNDRFRDGETRHKYGEHRSRSRREHISRSRSPSRSESKRTSGFDMAPPASGVTPAVSVNNAGQMLGITNMIHGTAQNLSSFGMSQIGALSLMQVQPMTQQATRHARRVYVGGLPPLINEQVIASFFSQVMTAVGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIVFEGVAVRVRRPSDYNPSLAAALGPSQPSPYLNLSAIGLAVGAIGAIEGLDRIFVGGLPYYFTEAQIRELLQSFGSLRAFDLVRDKDTGNSKGYGFCIYQDPAVTDIACASLNGLKMGDKTLTVRRATVSGHSKTEQDSILARAQQHIAIQKSVLEVGGLSIPGVERVTTTIDESPTKVVCLTEAITTEQLNNDEEYDEILEDMRDECCKFGTLVNVVIPRPNQNEEPASGVGKVFLEYSDSAGSLAAKSALNGRKFGGNTVTAVYYPEEKYLSMEYDV* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0946 527 Gene3D - 174 274 IPR012677 -
Lan19g0946 527 SUPERFAMILY RNA-binding domain, RBD 84 259 IPR035979 GO:0003676
Lan19g0946 527 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 377 IPR000504 GO:0003723
Lan19g0946 527 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 262 IPR000504 GO:0003723
Lan19g0946 527 MobiDBLite consensus disorder prediction 1 124 - -
Lan19g0946 527 Gene3D - 294 395 IPR012677 -
Lan19g0946 527 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 24 525 IPR006529 GO:0003723|GO:0005634|GO:0006397
Lan19g0946 527 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 370 IPR000504 GO:0003723
Lan19g0946 527 SUPERFAMILY RNA-binding domain, RBD 300 517 IPR035979 GO:0003676
Lan19g0946 527 Gene3D - 421 525 IPR012677 -
Lan19g0946 527 SMART rrm1_1 180 258 IPR000504 GO:0003723
Lan19g0946 527 SMART rrm1_1 300 373 IPR000504 GO:0003723
Lan19g0946 527 SMART rrm1_1 433 513 IPR000504 GO:0003723
Lan19g0946 527 MobiDBLite consensus disorder prediction 1 21 - -
Lan19g0946 527 PANTHER RNA-BINDING PROTEIN 16 526 - -
Lan19g0946 527 MobiDBLite consensus disorder prediction 23 55 - -
Lan19g0946 527 MobiDBLite consensus disorder prediction 63 110 - -
Lan19g0946 527 CDD RRM1_U2AF65 178 260 - -
Lan19g0946 527 CDD RRM3_U2AF65 425 513 - -
Lan19g0946 527 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 16 526 - -
Lan19g0946 527 CDD RRM2_U2AF65 299 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0946 Lan-Chr19 16799340 16813807 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0946 293 375 Eukaryotic Initiation Factors Gene Family AT1G71770 26.506 2.79e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0946 K12837 - vvi:100243034 652.514