Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0940 ATGGCATTTGAGAACTACTTTTCCCAGGAATGTAAAAGCAAAAGCATTCCCAATGCTGCGACCGAAACAGAAAATTACAATGGTTGTTTCGATTGCAACATTTGCTTAGACTTTGCTTACGAACCAATAGTCACTCTCTGTGGCCACCTTTACTGCTGGCCTTGCATCTACCAGTGGCTTCATGTCCAAAGTAATTCTCTTGCACCAGATGAGCACCCACAATGCCCTGTCTGCAAGGCTGATATATCCCATACAACAGTCGTTCCGCTCTATGGCCGAGGCCAGGCCTCTATTCAAAGTCACCGTGACGAAAAATCATCCACTTGTGATATTTTTGTACCACCTAGACCTTCTGCTTCCGTTTCTCGAGCTCTTTTGGCAGCATCATCTCAAAGTGCTCAACAGCATCCGTACCGTAATCCTTATCAAGGTCACTACGAAGAAGCTGCCACGTCTCAAATGCTCAATCCGGGATACCAATACCAAAACCCTGTGGTTGGCATGTTTGGAGAGATGCTTTTTGCTAGAGTGTTTGGCAACTCAGAAAATTCTAACGCCTACCCGAATTCTTATCAGTTGATGGGAAGCAATAGCACTAGATTAAGAAGGCGAGAGATGCTGGCAGACAAATCGCTAAACAGAATTTCGATTTTTGTTTTTTGCTGGTTTCTTCTGTGTCTTATTGTCTTCTGA 693 0.4416 MAFENYFSQECKSKSIPNAATETENYNGCFDCNICLDFAYEPIVTLCGHLYCWPCIYQWLHVQSNSLAPDEHPQCPVCKADISHTTVVPLYGRGQASIQSHRDEKSSTCDIFVPPRPSASVSRALLAASSQSAQQHPYRNPYQGHYEEAATSQMLNPGYQYQNPVVGMFGEMLFARVFGNSENSNAYPNSYQLMGSNSTRLRRREMLADKSLNRISIFVFCWFLLCLIVF* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0940 230 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Lan19g0940 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 230 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lan19g0940 230 SUPERFAMILY RING/U-box 27 91 - -
Lan19g0940 230 ProSiteProfiles Zinc finger RING-type profile. 32 79 IPR001841 -
Lan19g0940 230 CDD RING-HC_AtRMA_like 30 80 - -
Lan19g0940 230 SMART ring_2 32 78 IPR001841 -
Lan19g0940 230 Pfam Zinc finger, C3HC4 type (RING finger) 32 78 IPR018957 GO:0046872
Lan19g0940 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 230 - -
Lan19g0940 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 92 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0940 Lan-Chr19 16763016 16765064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0940 2 216 C3H Transcription Factor Family AT4G27470 40.088 4.10e-47 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0940 K10666 - gmx:100816864 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0684 4 9323647 9326055 Lan19g0940 19 16763016 16765064 LSH
Lan19g0940 19 16763016 16765064 Lan16g0134 16 1028448 1030655 LSH