Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0931 ATGAATGAAGATACTAATTCTTGGATAAGAAGGACAAATTTTTCTCACACTGTGTGTCATAGATTGGATCCTTCCAGATTGAACTCTCTTCCTATTAGCATTCAACCAGAGCATAGTCCAGGTCTGAAATCAAGGCCTTATTATGGGAAATCAATTTCTAATGGTTTACCGGTTCGAAGGAATTCCATATTAAACACGCAGCGATCTGTATCCCCTTTGCCTGAAACTCTTTTTTCCGAGGCCTTCAAAGAAGCTCGACATGAACAGAAGAGGTTTTCTACACCAGGTCCTCAAAGGAGTGGTAATGATAATAAGAGAATTATGGGGAAGTTATCAAACAAGGATTCGCGGGAAAGTAGGATGTCGAGTGCAAAGTCATTTTCCTCTAGTCCAATTAGGCAAGTGAAATTGAACGAAAAGTCGTTGAAGCATCACAAAGATGGATGGGCTAAGTATTTTGATCATGGTGGAGGAAGGGTTAATGCTGTGGAAACAGCAGATGATTGGACTGTTGATCTCTCTAAGCTATTTATTGGCCTTAGGTTTGCTCATGGGGCTCATAGTCGGCTTTACCATGGTGTATATAAGGAAGAGCCGGTTGCGGTGAAAATTATTCGGGTACCTGATGATGACGAGAATGGAACCTTAGCTTCTAGATTAGAGAACCAATTCATTAGGGAAGTCACACTTTTATCTCGACTCTACCATCCAAATGTTATAAAGTTTGTAGCAGCTTGCAGAAACCCACCGGTCTATTGTATCATCACAGAGTATTTAGCGGAAGGTTCCTTGAGGGTATATTTGCATAAGTTGGAGCGCAAAACTGTTTCTCCACAAAAGCTTATATCTTTTGCTCTGGATATTGCCCGGGGAATGGAATACATACACTCTCAAGGTGTCATTCATCGAGACCTTAAACCGGAGAATGTTCTCATCAGTGAAGATTCTCACCTTAAAATTGCTGATTTTGGCATTGCTTGTGAGGAGGCATTTTGTGACTTATTGGCTGATGACCCGGGTACCTATCGTTGGATGGCACCGGAGATGATCAAGCGTAAATCCTATGGGAAAAAGGTTGATGTCTATAGTTTTGGACTTATGTTATGGGAAATGGTTACCGGAACAATACCATATGAAGATATGACTCCGATCCAGGCTGCTTTTGCAGTAGTAAACAAGAATTCAAGACCGGTTATTCCGATAAACTGCCCACTCGCTATGAGAGCTTTAATTGAGCAATGTTGGTCCTTGCAACCGAATAAGAGACCGGAGTTCTGGCAGGTTGTTAAGGTTTTAGAGCAATTTGAATCTTCGCTTTCCCGCGATGGAACCCTGACTTTGGTACAAAACCCTTGCCAAGATCATAAGAAAGGACTTCGGCATTGGATTCAAAAGCTTGGCCCCGTGCATCAAAATCATGGCCCTGTTCCTAAGCCGAAATTTATATGA 1449 0.4189 MNEDTNSWIRRTNFSHTVCHRLDPSRLNSLPISIQPEHSPGLKSRPYYGKSISNGLPVRRNSILNTQRSVSPLPETLFSEAFKEARHEQKRFSTPGPQRSGNDNKRIMGKLSNKDSRESRMSSAKSFSSSPIRQVKLNEKSLKHHKDGWAKYFDHGGGRVNAVETADDWTVDLSKLFIGLRFAHGAHSRLYHGVYKEEPVAVKIIRVPDDDENGTLASRLENQFIREVTLLSRLYHPNVIKFVAACRNPPVYCIITEYLAEGSLRVYLHKLERKTVSPQKLISFALDIARGMEYIHSQGVIHRDLKPENVLISEDSHLKIADFGIACEEAFCDLLADDPGTYRWMAPEMIKRKSYGKKVDVYSFGLMLWEMVTGTIPYEDMTPIQAAFAVVNKNSRPVIPINCPLAMRALIEQCWSLQPNKRPEFWQVVKVLEQFESSLSRDGTLTLVQNPCQDHKKGLRHWIQKLGPVHQNHGPVPKPKFI* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0931 482 CDD STKc_MAP3K-like 183 432 - -
Lan19g0931 482 Gene3D Phosphorylase Kinase; domain 1 164 259 - -
Lan19g0931 482 PRINTS Tyrosine kinase catalytic domain signature 256 269 IPR001245 GO:0004672|GO:0006468
Lan19g0931 482 PRINTS Tyrosine kinase catalytic domain signature 294 312 IPR001245 GO:0004672|GO:0006468
Lan19g0931 482 PRINTS Tyrosine kinase catalytic domain signature 340 350 IPR001245 GO:0004672|GO:0006468
Lan19g0931 482 PRINTS Tyrosine kinase catalytic domain signature 359 381 IPR001245 GO:0004672|GO:0006468
Lan19g0931 482 PRINTS Tyrosine kinase catalytic domain signature 403 425 IPR001245 GO:0004672|GO:0006468
Lan19g0931 482 ProSiteProfiles Protein kinase domain profile. 176 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0931 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672|GO:0006468
Lan19g0931 482 Pfam Protein tyrosine and serine/threonine kinase 182 432 IPR001245 GO:0004672|GO:0006468
Lan19g0931 482 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 3 459 - -
Lan19g0931 482 PANTHER TYROSINE KINASE FAMILY PROTEIN 3 459 - -
Lan19g0931 482 SUPERFAMILY Protein kinase-like (PK-like) 163 432 IPR011009 -
Lan19g0931 482 MobiDBLite consensus disorder prediction 84 134 - -
Lan19g0931 482 Gene3D Transferase(Phosphotransferase) domain 1 260 463 - -
Lan19g0931 482 SMART serkin_6 176 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0931 Lan-Chr19 16683393 16686492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0931 1 481 MAP Kinase Kinase Kinase AT5G58950 55.894 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lan19g0931 PK_Tyr_Ser-Thr 3.5e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0931 - - gmx:100500590 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0683 4 9317669 9321073 Lan19g0931 19 16683393 16686492 LSH
Lan17g0707 17 6311449 6315338 Lan19g0931 19 16683393 16686492 PCT
Lan6g0728 6 6626273 6629452 Lan19g0931 19 16683393 16686492 PCT
Lan19g0931 19 16683393 16686492 Lan17g0707 17 6311449 6315338 PCT
Lan19g0931 19 16683393 16686492 Lan6g0728 6 6626273 6629452 PCT