Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0930 ATGAGTATTTTCTCCACTTTAGGTAATTTAGCTATTGCATCTTGTTGGAACGTTATGGAGAACAACCAAAATTCTGCAACCAAAACTGATAGAAAACTCATTGAGAGGAATAGAAGAAGTAAAATGAAGGCTCTCTCTTGCATGCTCAACTCAATTGTGCCTCAACAAAGCTCAAGGGAGCCTTTTTCACTGTCAGATCAATTACAAGAAGCCACAAATTACATAAAAACGCTAGAGATGAAACTGGAGAAAATGAAGGACAAAAAGAATAGGCTACTAGAAATTCAAAGGGAAAATATGAGCATGAATAAAGGAGGCTCAAAACCTCCACAAATAGAGATCCAACAAATGGGTTTAGCCTTAGTGATTGGTTTAATAACTGGGTTGGATTTTCAGTTCATGTTCAAAGAGTGCATCCGTTTTCTTCTTGAAGAAGGAGCATATATTGTTAGTGCAAATTATATAGTTTCTGGTGATTCATTTTTCCACACAATACACTGCCAGGTAGAGGAATCTTCCAATGGAGCGAGGATATCTGAGAGATTGAAGATGTTTGTGAGTTGCAAAATCTGA 573 0.3682 MSIFSTLGNLAIASCWNVMENNQNSATKTDRKLIERNRRSKMKALSCMLNSIVPQQSSREPFSLSDQLQEATNYIKTLEMKLEKMKDKKNRLLEIQRENMSMNKGGSKPPQIEIQQMGLALVIGLITGLDFQFMFKECIRFLLEEGAYIVSANYIVSGDSFFHTIHCQVEESSNGARISERLKMFVSCKI* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0930 190 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 22 187 IPR015660 GO:0003700|GO:0006357
Lan19g0930 190 Gene3D - 18 105 IPR036638 GO:0046983
Lan19g0930 190 PANTHER TRANSCRIPTION FACTOR BHLH162 22 187 - -
Lan19g0930 190 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 26 78 IPR011598 GO:0046983
Lan19g0930 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 25 95 IPR036638 GO:0046983
Lan19g0930 190 Pfam Helix-loop-helix DNA-binding domain 29 79 IPR011598 GO:0046983
Lan19g0930 190 Coils Coil 68 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0930 Lan-Chr19 16675689 16677162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0930 21 187 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 41.758 3.27e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan19g0930 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0930 - - lang:109345606 239.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0682 4 9309821 9313043 Lan19g0930 19 16675689 16677162 LSH