Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0927 ATGGTTGGATCCTTCGACGTCGCCGCCGTTCCTTTCAACCCCGACGGCTGGGGCCCACCTGATGCCGCCGTCGCCAGTTCCAACACCACCAACCTTCCACACAATGTCCCATTCGCTCCCTTCTCCCGTTCCGACAAGCTAGGCCGAATCGCTGATTGGACCCGAAACTTCAACAACCAGACCCGATCCAAGAACCCATCCGACGCCGTTTTCGACTTCACCAACGACGACTCCTTCCCCGCCTCCGCCGAAGACGACGCCTCCTTCCGCCTCGTCGACGGGAAACCACCACCGCGCCCCAAATTCGGCCCTAAATGGCGGTTCCAGCAACAAAGGCAACTCCCACAGCGTAAGGATGAAGAAGTTGAAGCCAAAAAACGTGAAGCTGAGAAAGAAAGAGCTCGCCGTGATCGTCTCTACCATCTCAACCGCTCAAACCCTAATGGACCTCGTCGCGAAGCCGCCGTGTTCAAATCCTCTGTCGATATCCAGCCTGAGTGGAACATGCGTGATCAGATCCCTTTCTCAACATTCTCCAAGCTCTCATTCGCCGTTTCTGAACCCGAAGACCTTCAATTTTGCGGCGGACTCGAGTATTATGATCGAACCTACGATCGCGTTACGCCTAAGAGTGACCGCAGATTGGAGCGTTTCAAGAACAGGAACTTCTTCAAGGTTACCACTACTGATGATCCTGTTATTCGAAAACTCGCAAATGAGGATAAGGCGACTGTGTTCGCCACGGATTCTATCCTCTCCACACTGATGTGTGCCCCTAGGTCTGTTTACTCTTGGGATATTGTTGTTCAGCGTGTTGGGAATAAATTGTTCTTTGATAAGCGTGATGGTTCGCAATTGGACTTGCTTTCGGTTCATGAGACATCTCAGGAGCCTTTGCCTGAGGCGAATGAGGATATTAACTCGGCGCATTCCCTGAGTGTTGAGGCTGCGTATATTAACCAAAATTTCTCGCAGCAGGTTTTGGTTAGGGATGGAAATAAGGTGAATTTTGATGAGCCTAACCCCTTTGCTAGTGAGGGTGAAGAGGTTGCTTCTGTGGCTTATAGGTATAGGAGGTGGAAGTTGGATAATGAGATGTATCTTGTTGCTAGGTGTGAGGTGCAGAGTGTGCTTGATGTGAATAAGCAAAGGTCTTGCCTTACTTTGAATGCTTTGAATGAGTTTGATCCTAAGTATTCGGGTGTGGATTGGAGGCAGAAGTTAGAGACTCAGAGGGGTGCTGTTTTAGCTACTGAGCTGAAGAACAATGCGAATAAGTTGGCTAAATGGACCGCTCAGGCTCTGTTGGCCAGTGCTGATTTCATGAAGTTGGGATATGTGTCTCGGATTCATCCACGTGACCATTTTAATCATGTGGTTTTGGCTGTGGCTGGATATAAGCCGAAGGACTTCGCGGCACAGATTAATTTGAACCCAAATAACATGTGGGGAATTGTGAAGTCAATTGTGGGCTTGTGCATGAAACTGGAAGAGGGGAAATATGTTCTTGTGAAGGATCCATCTAAGCCACAGGTTAGGATTTATCAGATTCCAGCAGATGCATTTGAGAATGACTATGTGGAGGAGCCACTTCCGGAAGAGGAACAAGCTCAACCTCCAGCAGAGGGTGCTGATGGTGAAGAGGCAGCTACTATCTCAAATGATGTGACTGATAAGCAGATAGATAACCAAGCTTGA 1698 0.49 MVGSFDVAAVPFNPDGWGPPDAAVASSNTTNLPHNVPFAPFSRSDKLGRIADWTRNFNNQTRSKNPSDAVFDFTNDDSFPASAEDDASFRLVDGKPPPRPKFGPKWRFQQQRQLPQRKDEEVEAKKREAEKERARRDRLYHLNRSNPNGPRREAAVFKSSVDIQPEWNMRDQIPFSTFSKLSFAVSEPEDLQFCGGLEYYDRTYDRVTPKSDRRLERFKNRNFFKVTTTDDPVIRKLANEDKATVFATDSILSTLMCAPRSVYSWDIVVQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPEANEDINSAHSLSVEAAYINQNFSQQVLVRDGNKVNFDEPNPFASEGEEVASVAYRYRRWKLDNEMYLVARCEVQSVLDVNKQRSCLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLASADFMKLGYVSRIHPRDHFNHVVLAVAGYKPKDFAAQINLNPNNMWGIVKSIVGLCMKLEEGKYVLVKDPSKPQVRIYQIPADAFENDYVEEPLPEEEQAQPPAEGADGEEAATISNDVTDKQIDNQA* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0927 565 Hamap Eukaryotic translation initiation factor 3 subunit D [EIF3D]. 3 528 IPR007783 GO:0003743|GO:0005737|GO:0005852
Lan19g0927 565 MobiDBLite consensus disorder prediction 525 565 - -
Lan19g0927 565 PIRSF Transl_init_eIF3d 1 546 IPR007783 GO:0003743|GO:0005737|GO:0005852
Lan19g0927 565 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 4 549 IPR007783 GO:0003743|GO:0005737|GO:0005852
Lan19g0927 565 MobiDBLite consensus disorder prediction 85 136 - -
Lan19g0927 565 Pfam Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 6 516 IPR007783 GO:0003743|GO:0005737|GO:0005852
Lan19g0927 565 Coils Coil 117 137 - -
Lan19g0927 565 MobiDBLite consensus disorder prediction 112 136 - -
Lan19g0927 565 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT D 4 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0927 Lan-Chr19 16645113 16671954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0927 4 560 Eukaryotic Initiation Factors Gene Family AT4G20980 75.000 0.0 883
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0927 K03251 - gmx:100799613 974.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0681 4 9303468 9307348 Lan19g0927 19 16645113 16671954 LSH