Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0922 ATGGAAGGAAACTGGGTTGAGGGAAAGAGAATCTTGGAGTATGAGGATGAAGAAGAGGAAGAGGAAGTGGTGAGTGATATAATGAGTTATGGAGAAGAAAGAATGAATAAGAAGAGGGTGGTGAGCATAGATCTATATAGCAGCAAAAAAGGGTCAAAAGCTGGAGGATCAGTGCCACCTTCTTGTCAAGTGGATAGTTGCAAAACTGATCTAAGTGAAGCTAAGAATTATCACAGAAGGCACAAGGTTTGTGAGTTCCATGCCAAAGCTCCTTCTGTGCTCATAGCAGATCAGCACCAAAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGCTATCAGAATTTGATGAGTCAAAAAGGAGTTGCAGAAGGCGTTTGGCTGGACATAATGAGAGGCGTCGCAAAAATGCAGCTGATTATAATGGAGAAGGATTTCATTGA 441 0.424 MEGNWVEGKRILEYEDEEEEEEVVSDIMSYGEERMNKKRVVSIDLYSSKKGSKAGGSVPPSCQVDSCKTDLSEAKNYHRRHKVCEFHAKAPSVLIADQHQRFCQQCSRFHELSEFDESKRSCRRRLAGHNERRRKNAADYNGEGFH* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0922 146 PIRSF SBP 1 146 IPR017238 GO:0003677|GO:0003700|GO:0009908
Lan19g0922 146 ProSiteProfiles Zinc finger SBP-type profile. 59 136 IPR004333 GO:0003677
Lan19g0922 146 SUPERFAMILY SBT domain 60 140 IPR036893 GO:0003677|GO:0005634
Lan19g0922 146 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 16 136 - -
Lan19g0922 146 Pfam SBP domain 62 135 IPR004333 GO:0003677
Lan19g0922 146 Gene3D - 52 123 IPR036893 GO:0003677|GO:0005634
Lan19g0922 146 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 136 IPR044817 GO:0003677
Lan19g0922 146 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0922 Lan-Chr19 16614629 16617936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0922 49 139 SBP-box Gene Family AT2G33810 69.231 8.54e-42 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lan19g0922 SBP 4.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0922 - - lang:109329071 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0675 4 9276061 9277784 Lan19g0922 19 16614629 16617936 LSH
Lan19g0922 19 16614629 16617936 Lan16g0151 16 1187076 1190229 LSH