Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0921 ATGCCTCTCTCTGATTCTCCAATCGCCGATGATAGCGATAACGATCCATCATTGGAAGAAGATGATCCTGATGAAGAAGATGATCCTGAGGAAGAAGATGTAGAAGAAGTTGAAGAAGTAGAAGATGAAGAAGAGGAGGTTGAAGAGGTGGAGGAGGAAGAAGAGGTGGAAGAGGAAGAGGAGGTGGAAGAGGAAGAGGAGGAAGAAGAGGTAGAAGAAGAGGAGGAAGAAGAGGTAGAGGTAGAAGAGGAAGAAGAGGTAGAAGTAGAAGAGGAAGTCGAAGAAGAAGAGGAATTTGAAGAAGAGGTTGAAGAAGAAGAGGAGGAGGAGGAAGAAGAAGAAGAGGAGGAGGAGGAAGAAAAAGTTGTTGAGGAGGATAAAGTGACAGTTCAAGATGAATCACGTGCACCTGATAACGATCGAAAAGATTCATGCCTACATATGGAGTCTCCGGGGCAAGATGGGAACTTGAAGCCGGTTTCTTCCATGGCAGAAAATAATGAAGTAATGCCATCATCTAGTATGCATTTATCGGAAAAGAATGAAGCCATACTCGAAGCATCTGTTCCTTCATGTGAGACACTAACATTGAACAAGGAGGAGTTTCATTCAAAACATGAAATTTCAAGTAATCCAAAGTCAAGAGAAAACGCCACTATTGTCGAAGGTGGCAACAGTCAAGGACTGAATGTTGATACTGAAAATGCTGGATCCCTTCCACAGAGTAAAACCTTTGTCAGTTGCAATGAACTAAGTTGCAATAATGAAGCTGAATTATGTGGGGTTGAGGATATGGATGCTAGGGCTACCAAGTCATCCAACAATACTGGAAAAGATGTGGCTATTGGCCTCCCAGAGAGAGATGACTTTGTCAAGGATGCTGTTGGTGGGCAGAAGTCAAAGAACGAAGTCATGTTGTCGGAGATGGAGACTAGTGACAGTGTGAAGGAAAAGACACCAAGGAGGACTAGAAGTGGGTCTCCCAATGCTGAGATGAAAGATGGAAACAAACGCCTCAGACACGTATGTGATTTTTTTGCTAAAGGATGGTGCATCAGAGGTAGTTCTTGTAGGTTTCTTCATATAAAAGATCCTGTGAATAATACCGACCAGGAGACTGATGGAGACTCAATTACTGCAAATCAGACGAGAGAATTGGAATTGAAAGAAGGTGTTAGGGGCAATGTTGAGAGATCAAGGACGAATGAACAAGAAGCAAGCCCAACTTGGCATCCATCTCAAGAAAAACAGAAATTTCCTTTGAGGGACAACTTGCTTCAAGAGAGTAGATTTGCATTTAATGCATCAAGCAACTATTTCAACACAAATCACTCTTCCTATTCAACCCGTTCAGAGGGAATGGCAACTGCTCAAAACCAACATATGTACAATGGATATACTTCCGCTATTTTGAGTCATTCACCTAATTCAAGCCTGGCTGCTCAATTTCCAGCTACAAGCATGTCACTGTCCCACCGGTCAGGAATTTCACTGCCTTTTAGCTCATCATACAGTGACAGAGACTATCATGCACCTAGGTCCACTTTCTCTGTTTCAGGACAGGAAGATTTGCCTCTAGGTAGTTCTTCATCCAGGGGTCCACCACATTCCTCTGGATATAAATCGAAAGTCGACTCTTATGATTGGGAACCTTCTGTACCATTTCAACCATCCTTTTTTATTACTTCTATGAGTGGATCATCCCCTGGAGATCTGTATGACCCGCTTCGTGATAGCATTGAGATACCTAATATAGGAGATGGATCTTTGAAAGCTTCCCTTTTAATTCACAGACCATCTGTCGAGGCTCCACCACAGGTGCAGACATATGGTGATTCTGCTGTAGTTGGGAAACACAAGTCTGATGTTAATGATGCCAAAAGTTCTGTATCTTCTCATATTAGAATTAATGAAAATGAGTTAAGCAAAAGATCTGTTCCTCATGAAAAAGATTGCCTTGTGACTGAAGCAGAGATAACATCAGGGACTGATGAAAATTACCAAAACAGTAAAATAGGCATGGAACAATATACCATTGATGTCGAAGATTTTACGACAATGGAGAAAGAACGGACTGGGCGTGATACTAGACATCATGGCGAAGGATCAGGGCACAAGAAGAGGAGAGTAGACAGAGATAAGAAAATTAGTGAAATGGATGTTGACTCTGTGCTGGATGGAAGTTTGCAGAAAGAATCGAAGGCTCTAAAAAATTTCCACGCAGTACTCGTTGATCATGTCAAAGATTTGTTAAAACCATATTGGCATGAGGGTCATCTCAGTAAGGATGCACATATTGTAATAGTTAAAAAATCCGTTGACAAGGTTATTAGCACTTTAGAGCCGCACCAGATTCCAACCACCATAGATACTGCAAAACATTATGTTTCTTCATGTCGAATGAAAATTGCAAAGCTGGTCGATGGATATGTCAATAAATATAGCAAGTCTTGA 2454 0.4161 MPLSDSPIADDSDNDPSLEEDDPDEEDDPEEEDVEEVEEVEDEEEEVEEVEEEEEVEEEEEVEEEEEEEEVEEEEEEEVEVEEEEEVEVEEEVEEEEEFEEEVEEEEEEEEEEEEEEEEEKVVEEDKVTVQDESRAPDNDRKDSCLHMESPGQDGNLKPVSSMAENNEVMPSSSMHLSEKNEAILEASVPSCETLTLNKEEFHSKHEISSNPKSRENATIVEGGNSQGLNVDTENAGSLPQSKTFVSCNELSCNNEAELCGVEDMDARATKSSNNTGKDVAIGLPERDDFVKDAVGGQKSKNEVMLSEMETSDSVKEKTPRRTRSGSPNAEMKDGNKRLRHVCDFFAKGWCIRGSSCRFLHIKDPVNNTDQETDGDSITANQTRELELKEGVRGNVERSRTNEQEASPTWHPSQEKQKFPLRDNLLQESRFAFNASSNYFNTNHSSYSTRSEGMATAQNQHMYNGYTSAILSHSPNSSLAAQFPATSMSLSHRSGISLPFSSSYSDRDYHAPRSTFSVSGQEDLPLGSSSSRGPPHSSGYKSKVDSYDWEPSVPFQPSFFITSMSGSSPGDLYDPLRDSIEIPNIGDGSLKASLLIHRPSVEAPPQVQTYGDSAVVGKHKSDVNDAKSSVSSHIRINENELSKRSVPHEKDCLVTEAEITSGTDENYQNSKIGMEQYTIDVEDFTTMEKERTGRDTRHHGEGSGHKKRRVDRDKKISEMDVDSVLDGSLQKESKALKNFHAVLVDHVKDLLKPYWHEGHLSKDAHIVIVKKSVDKVISTLEPHQIPTTIDTAKHYVSSCRMKIAKLVDGYVNKYSKS* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0921 817 MobiDBLite consensus disorder prediction 307 334 - -
Lan19g0921 817 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 342 361 IPR000571 GO:0046872
Lan19g0921 817 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 68 817 - -
Lan19g0921 817 MobiDBLite consensus disorder prediction 310 334 - -
Lan19g0921 817 ProSiteProfiles Zinc finger C3H1-type profile. 342 364 IPR000571 GO:0046872
Lan19g0921 817 MobiDBLite consensus disorder prediction 512 537 - -
Lan19g0921 817 MobiDBLite consensus disorder prediction 213 236 - -
Lan19g0921 817 MobiDBLite consensus disorder prediction 1 161 - -
Lan19g0921 817 Coils Coil 30 128 - -
Lan19g0921 817 MobiDBLite consensus disorder prediction 124 148 - -
Lan19g0921 817 MobiDBLite consensus disorder prediction 12 123 - -
Lan19g0921 817 Gene3D - 328 406 - -
Lan19g0921 817 SUPERFAMILY CCCH zinc finger 337 361 IPR036855 GO:0046872
Lan19g0921 817 MobiDBLite consensus disorder prediction 390 417 - -
Lan19g0921 817 MobiDBLite consensus disorder prediction 512 543 - -
Lan19g0921 817 MobiDBLite consensus disorder prediction 203 236 - -
Lan19g0921 817 MobiDBLite consensus disorder prediction 689 715 - -
Lan19g0921 817 SMART c3hfinal6 338 363 IPR000571 GO:0046872
Lan19g0921 817 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 68 817 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0921 Lan-Chr19 16605077 16609873 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan19g0921 zf-CCCH 2.2e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0921 - - lang:109334316 1395.18