Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lan19g0918 | ATGGCACCGAAAACGGGTAGAGTTAATGTGAACGGCAAGGATGTGAAGGAGTTGCATTTTCGTGGAGTGAGAAAGAGGCCTTGGGGAAAATATGCGGCTGAGATCAGAGATCCAACCAAGAAAACCCGTGTCTGGCTTGGCACCTTCGACACGGCGGAAGAAGCGGCACGAGCCTACGACGCCGCCGCACGTGACTTCCGTGGTCCTAAAGCCAAAACAAACTTCCCTCTCCCTTCCGTTTCCGACAATCTCAACACCCCTAGCCAAAGCAGCACCGTCGAGTCCTCCAGCCGCGACCGTGATCGCGATCATGAATCGCCGCTTCTTGTTGTCTCTGGTTCCTCACCGTTGGACCTTAACTTCGCCCCTTCCGCCGTCACCTTCCCCTTCCACCACCAGCTCACCGCCGTGCCGGCGGAGAACAAGGTTTTGTTCTTCGATGCGGTCCTACGAGGTGGTTTGGTCGGTTCCAGGTTCAATTATAATAATATGGTGGCGGCGAGTGAGTTCCACGTGGCATCAGGGACACAAAGCAATTCAGATTCGTCCTCTGTTATCGATCTGAACCACGATGAGCGTGATCTGAAATCTGCAAGAGTTTTTGATATTGACCTTAACCAACTTCCTCCACAGGAATACGAAGCTTAG | 648 | 0.5293 | MAPKTGRVNVNGKDVKELHFRGVRKRPWGKYAAEIRDPTKKTRVWLGTFDTAEEAARAYDAAARDFRGPKAKTNFPLPSVSDNLNTPSQSSTVESSSRDRDRDHESPLLVVSGSSPLDLNFAPSAVTFPFHHQLTAVPAENKVLFFDAVLRGGLVGSRFNYNNMVAASEFHVASGTQSNSDSSSVIDLNHDERDLKSARVFDIDLNQLPPQEYEA* | 216 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lan19g0918 | 215 | SUPERFAMILY | DNA-binding domain | 19 | 77 | IPR016177 | GO:0003677 | |
Lan19g0918 | 215 | Pfam | AP2 domain | 19 | 68 | IPR001471 | GO:0003700|GO:0006355 | |
Lan19g0918 | 215 | CDD | AP2 | 19 | 76 | IPR001471 | GO:0003700|GO:0006355 | |
Lan19g0918 | 215 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 3 | 195 | - | - | |
Lan19g0918 | 215 | MobiDBLite | consensus disorder prediction | 76 | 94 | - | - | |
Lan19g0918 | 215 | Gene3D | AP2/ERF domain | 19 | 77 | IPR036955 | GO:0003700|GO:0006355 | |
Lan19g0918 | 215 | ProSiteProfiles | AP2/ERF domain profile. | 19 | 76 | IPR001471 | GO:0003700|GO:0006355 | |
Lan19g0918 | 215 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE | 3 | 195 | - | - | |
Lan19g0918 | 215 | MobiDBLite | consensus disorder prediction | 70 | 105 | - | - | |
Lan19g0918 | 215 | PRINTS | Ethylene responsive element binding protein signature | 20 | 31 | IPR001471 | GO:0003700|GO:0006355 | |
Lan19g0918 | 215 | PRINTS | Ethylene responsive element binding protein signature | 42 | 58 | IPR001471 | GO:0003700|GO:0006355 | |
Lan19g0918 | 215 | SMART | rav1_2 | 19 | 82 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lan19g0918 | Lan-Chr19 | 16570462 | 16571386 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lan19g0918 | 16 | 85 | AP2-EREBP Transcription Factor Family | AT5G44210 | 84.286 | 3.05e-38 | 129 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Lan19g0918 | AP2 | 7.8e-15 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lan19g0918 | K09286 | - | gmx:100170742 | 230.72 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lan19g0918 | 19 | 16570462 | 16571386 | Lan16g0155 | 16 | 1221266 | 1221867 | LSH |