Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0918 ATGGCACCGAAAACGGGTAGAGTTAATGTGAACGGCAAGGATGTGAAGGAGTTGCATTTTCGTGGAGTGAGAAAGAGGCCTTGGGGAAAATATGCGGCTGAGATCAGAGATCCAACCAAGAAAACCCGTGTCTGGCTTGGCACCTTCGACACGGCGGAAGAAGCGGCACGAGCCTACGACGCCGCCGCACGTGACTTCCGTGGTCCTAAAGCCAAAACAAACTTCCCTCTCCCTTCCGTTTCCGACAATCTCAACACCCCTAGCCAAAGCAGCACCGTCGAGTCCTCCAGCCGCGACCGTGATCGCGATCATGAATCGCCGCTTCTTGTTGTCTCTGGTTCCTCACCGTTGGACCTTAACTTCGCCCCTTCCGCCGTCACCTTCCCCTTCCACCACCAGCTCACCGCCGTGCCGGCGGAGAACAAGGTTTTGTTCTTCGATGCGGTCCTACGAGGTGGTTTGGTCGGTTCCAGGTTCAATTATAATAATATGGTGGCGGCGAGTGAGTTCCACGTGGCATCAGGGACACAAAGCAATTCAGATTCGTCCTCTGTTATCGATCTGAACCACGATGAGCGTGATCTGAAATCTGCAAGAGTTTTTGATATTGACCTTAACCAACTTCCTCCACAGGAATACGAAGCTTAG 648 0.5293 MAPKTGRVNVNGKDVKELHFRGVRKRPWGKYAAEIRDPTKKTRVWLGTFDTAEEAARAYDAAARDFRGPKAKTNFPLPSVSDNLNTPSQSSTVESSSRDRDRDHESPLLVVSGSSPLDLNFAPSAVTFPFHHQLTAVPAENKVLFFDAVLRGGLVGSRFNYNNMVAASEFHVASGTQSNSDSSSVIDLNHDERDLKSARVFDIDLNQLPPQEYEA* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0918 215 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
Lan19g0918 215 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
Lan19g0918 215 CDD AP2 19 76 IPR001471 GO:0003700|GO:0006355
Lan19g0918 215 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 195 - -
Lan19g0918 215 MobiDBLite consensus disorder prediction 76 94 - -
Lan19g0918 215 Gene3D AP2/ERF domain 19 77 IPR036955 GO:0003700|GO:0006355
Lan19g0918 215 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Lan19g0918 215 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 3 195 - -
Lan19g0918 215 MobiDBLite consensus disorder prediction 70 105 - -
Lan19g0918 215 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Lan19g0918 215 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Lan19g0918 215 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0918 Lan-Chr19 16570462 16571386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0918 16 85 AP2-EREBP Transcription Factor Family AT5G44210 84.286 3.05e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan19g0918 AP2 7.8e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0918 19 16570462 16571386 Lan16g0155 16 1221266 1221867 LSH