Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0907 ATGGGTTTGATTGATCTCAACACTACAGAAGATGATGAAACTTTATCATCTTCTTCTTTCTCTTCTCACTCTGGTATAAGCACTTGTGGTTCAGCTTTGCCTCCTTCTGTTCCTTCTTCTGTGTGTTTAGAGTTATGGCATGCTTGTGCTGGTCCTATGATCTCTCTTCCTAAGAAAGGAAGTGTTGTTGTTTATTTCCCACAAGGCCACTTTGAGAAACAAGTTCAGGATTTTCCAATCACTGCTTGTAACATCTCACCACATGTGTTCTGTCGTGTGCTTGATGTTAAGCTTCATGCAGAGGAAGGGAGTGATGAAGTGTATTGCCAGCTCTTGTTAATTCCTGAAAGTGAGCAAATGGAACAAAACTTGCGGGAAGGGGTTATTAATGTTGATGGTGAAGAGGAGGATGCTGAAGCTATAGTTAAGTCAACAACACCTCATATGTTCTGCAAGACTTTGACTGCTTCTGATACCAGCACTCATGGAGGATTTTCTGTTCCTCGTCGAGCAGCAGAAGATTGCTTCCCTCCCCTGGATTACAGTCAACAAAGACCTTCACAAGAGCTTGTGGCAAAGGATCTGCATGGCCTAGAGTGGAGGTTTCGGCATATATACCGGGGGCAACCACGGAGGCATTTGCTCACAACCGGATGGAGTGCGTTTGTGAACAAGAAGAAGCTTACGTCTGGCGATGCCGTGTTATTTCTTAGGGGTGAGGATGGAGAACTGAGATTAGGGATCCGTAGGGCCGCTCAACTGAAGAGTGGAACATTTGCAGTTCCCTCCAGTCAGCAATTGAATCCTAGCACTCTCATGGATGTTGTTAATGCTTTGTCCACACGATGTGCCTTTCGTGTTTGCTATAATCCAAGGGTCAGCTCTTCAGAATTTATCATACCACTCCACAAATTCTCGAAGAGCCTTGATTGTTCTTATTCAGTTGGTATGAGGTTCAGGATGCGCTTTGAAACTGAAGATGCAGCAGAGCGAAGATTCACAGGATTAATTGCTGGAATTAGTGATGTGGATCCTGTTCGATGGCCCGGATCAAAATGGAGATGCCTACTGGTAAGGTGGGATGACATGGAAACTGCTAGGCATAATAGGGTTTCCCCATGGGAAATTGAGCCATCTGGTTCTGCTTCTACTACCAATAACTTGATGGCTGCTAGTTTGAAGAGGAGCAGAATTGGATTGAGTTCAGAGAAACTAGAATTTCCAGTTCCGAATGGGATTGGAGCCTCAGACTTCGGGGAATCATCAAGATTCCGGAAGGTCTTGCAAGGTCAAGAAATGTCCGGTGTTAATACTCCCTTTGATGGCATAAATGCTCAGAGTTCCCGATTATCTGAGTTAGGGAGATGCTATCCTGGTTCAAACTGTTCTGGGTTTGCTGCAACAGGAAATAATCTCAGAATCCCACAAGTGAGTTCTGATTTTTCCTGCAATGGCATAGGCTTCGGTGGATCTTATGGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATATGGACGAGCCTTGTCTATGGACGAGGCTCGCGGAAATGGTCGCTTTGGACTCTTTGATGGTTATCATCATATGCTTAGCTCCAGAAATGGATGGTCTGCTCAGATGCATGATAACTCTTCACATTTGCATGCATCGGTTCAACCAGGGCAAGTGTCATCTCCATCGTCTGTGTTAATGTTCCAACAAGCAGTCAATCCAGTTTTAAACGCTGACTATAATAACAAACACAACCAAGCGGGTAATGTCCATTACCGCGGTTTATATGCTACTAAAGTGAAAGGTGGAGTTTCTGCAACTTCCCCATCTGTTGAGCCTATTTACTCCGGGCATGCTCAGGAAGCCACAAATTCTTTTGGTATGTTTAATCTGCGTAGTCAGTTGGGTGGGTCTCGGTCATATGAATCGGTGTCAGCACTTAGAAACAGTCAAGAGATGGCTTCCTCACGTAAAAGTAGCTGCAGACTCTTTGGGTTTTCGTTAACTGAAGACAGAAACCTCGCAAATAAAGAAGCTGATCCTTCTTCAGTCACTTGTCAATTGAATTCTGGACCTCCCTTTGCTAGATCTATTGAAGATGAGTTTCACCCTGGCCGTTCTCTCGGGAATAAGGCGGTTGGAAGTAACTGCACTAATGGTGTGTTGCAGTATTAA 2178 0.4458 MGLIDLNTTEDDETLSSSSFSSHSGISTCGSALPPSVPSSVCLELWHACAGPMISLPKKGSVVVYFPQGHFEKQVQDFPITACNISPHVFCRVLDVKLHAEEGSDEVYCQLLLIPESEQMEQNLREGVINVDGEEEDAEAIVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLTSGDAVLFLRGEDGELRLGIRRAAQLKSGTFAVPSSQQLNPSTLMDVVNALSTRCAFRVCYNPRVSSSEFIIPLHKFSKSLDCSYSVGMRFRMRFETEDAAERRFTGLIAGISDVDPVRWPGSKWRCLLVRWDDMETARHNRVSPWEIEPSGSASTTNNLMAASLKRSRIGLSSEKLEFPVPNGIGASDFGESSRFRKVLQGQEMSGVNTPFDGINAQSSRLSELGRCYPGSNCSGFAATGNNLRIPQVSSDFSCNGIGFGGSYGFQKVLQGQEILPSQPYGRALSMDEARGNGRFGLFDGYHHMLSSRNGWSAQMHDNSSHLHASVQPGQVSSPSSVLMFQQAVNPVLNADYNNKHNQAGNVHYRGLYATKVKGGVSATSPSVEPIYSGHAQEATNSFGMFNLRSQLGGSRSYESVSALRNSQEMASSRKSSCRLFGFSLTEDRNLANKEADPSSVTCQLNSGPPFARSIEDEFHPGRSLGNKAVGSNCTNGVLQY* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0907 725 Pfam Auxin response factor 276 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lan19g0907 725 Gene3D - 148 252 IPR015300 -
Lan19g0907 725 MobiDBLite consensus disorder prediction 9 23 - -
Lan19g0907 725 Gene3D - 312 386 - -
Lan19g0907 725 SMART B3_2 150 252 IPR003340 GO:0003677
Lan19g0907 725 PANTHER AUXIN RESPONSE FACTOR 33 725 - -
Lan19g0907 725 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 33 725 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan19g0907 725 SUPERFAMILY DNA-binding pseudobarrel domain 143 256 IPR015300 -
Lan19g0907 725 CDD B3_DNA 148 250 IPR003340 GO:0003677
Lan19g0907 725 Pfam B3 DNA binding domain 150 251 IPR003340 GO:0003677
Lan19g0907 725 ProSiteProfiles B3 DNA-binding domain profile. 150 252 IPR003340 GO:0003677
Lan19g0907 725 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0907 Lan-Chr19 16477659 16484285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0907 149 551 B3 DNA Binding Superfamily AT2G33860 55.637 3.22e-143 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan19g0907 B3 2.2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0907 K14486 - gmx:100789906 1137.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0669 4 9233507 9239954 Lan19g0907 19 16477659 16484285 LSH