Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0898 ATGAATATTCATAATAATAACCATGCAAATTCTGAAGAGATTCTTGAGAATGTATGGGCTAAAATTATGAGTAGTGATAGAGCAAATAGAAGAACAAGTGAAGTAGCAGAATCTTGTAATTCTTGGGAAGAATTGCCTAATCTTGATGGAAGAGATGGGTCTATGGAAATGCTACAAAGACTTCCAAGTTTAGGAAGATGGATATCAATGGGAGCTGATTTTTGGGAAGAAGTTTTAGATGGTATTCTTCCAACTACAAACAACACAGAAGATTCTACAAGTAACAAGAATTTGGAAATTGTGAGTGTTACTAAAAAGTTAGAAGATGGTGTAAGAAAAGAGAAAGTGGTTGCAAAACACTATAGAGGTGTAAGAAGAAGGCCATGGGGTAAATATGCAGCAGAGATTAGAGACTCTTCAAAAAAAGGTGCTAGGGTTTGGCTTGGAACATTTGATACAGCTGAAGAAGCAGCTTTAGCTTATGATAAAGCTGCTTTAAGAATTAGAGGTTCTAAAGCATACCTAAATTTCCCACTTGAGACAGTTTCAAAGGCTTTAGGGTTTACTTGTGCTTCCACAACTTGTACTCAAAAGGGTTGTTGCTATGCATGCACATGCACATGCACAAATGTTGAGAACAAAGATAATTGTTACAAATCCAAGAAAAGGGTATCAAGGGAAGGTGAAGAATTTGTTGATATGATGGTGATGAATGAACAACCTGCAACAAAAAGGGTGGCAACATTGGAAGGTATGTTAGAGAATGAAATAGATGTTCTTGTATTTCAAGACCTAGGTACTGATTATTTGGACAATTTGCTATCTTCTTTTTGA 834 0.3585 MNIHNNNHANSEEILENVWAKIMSSDRANRRTSEVAESCNSWEELPNLDGRDGSMEMLQRLPSLGRWISMGADFWEEVLDGILPTTNNTEDSTSNKNLEIVSVTKKLEDGVRKEKVVAKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFDTAEEAALAYDKAALRIRGSKAYLNFPLETVSKALGFTCASTTCTQKGCCYACTCTCTNVENKDNCYKSKKRVSREGEEFVDMMVMNEQPATKRVATLEGMLENEIDVLVFQDLGTDYLDNLLSSF* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0898 277 SMART rav1_2 120 184 IPR001471 GO:0003700|GO:0006355
Lan19g0898 277 ProSiteProfiles AP2/ERF domain profile. 120 178 IPR001471 GO:0003700|GO:0006355
Lan19g0898 277 Pfam AP2 domain 120 170 IPR001471 GO:0003700|GO:0006355
Lan19g0898 277 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Lan19g0898 277 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Lan19g0898 277 Gene3D AP2/ERF domain 119 180 IPR036955 GO:0003700|GO:0006355
Lan19g0898 277 CDD AP2 119 178 IPR001471 GO:0003700|GO:0006355
Lan19g0898 277 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 277 - -
Lan19g0898 277 SUPERFAMILY DNA-binding domain 120 180 IPR016177 GO:0003677
Lan19g0898 277 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF091 16 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0898 Lan-Chr19 16399852 16400760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0898 13 277 AP2-EREBP Transcription Factor Family AT4G18450 36.190 5.07e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan19g0898 AP2 5.5e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0898 - - lang:109334345 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0898 19 16399852 16400760 Lan16g0166 16 1280116 1293289 LSH