Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0896 ATGCATTTCCCTTCAACTATCCCTCTATCACTTGCAAGAATTTGGATACCCCTTAACTTACTCATCTCCTTTGTTCTCATTAACTGCTATCTAGTCGAGGCTACAAATGCAGACAACGAAGTTATATCTATTGGGGCTATCATTGATGGTAATTCTCGTATCGGGAAAGAACAGAAAGTAGCCATGGAAATTGCAGCTCAAAGTTACAATAACACTACAAAGTCCTTCAAGTTGGCTCTCTATTTCCGGAACTCCACGAAAGGTCCCCTGACGGCCATCTCGCTTGCTGAAGAAATGATTAATACACAGAAGGTGCAAGTGATTATAGGGATGCACACATGGTCAGAAGCAGCTCTAGTTTCTGAAATTGGAAGCCAAGCTCAAGTTCCAATAATTTCCTTTGCAGGACCTACCATTACCCCACCATTGATGCAAATTCGATGGCCTTTTCTAGTGACTCTGGCTAACAATGGTACATCATATATAGAATGCATTGCAGATATAGTTCAAGCTTATAGCTGGCAAAGAGTAGTAGCCATTTATGAAGATGATGCATACGGTGGAGATTATGGTAAGCTAGCACTGCTATCTGAGGCCCTCCAAGATGTAAGTTCAATGATTGAATACCGTTTGGCTCTTCCACCAATTTCTTCTCTACATGATCCAAAAGAGTCAATACGCGAAGAGCTTCAAAAGTTAATGATGCAAACACAATCTCGGGTGTTCATTGTGCTGCAATCATCATTAGAAATGGTAATTCATTTGTTCAAAGAAGCTTCAACAATGAGACTTGTGGATAGAGAATCAGTTTGGATAATTCCTGAAAGCATAACTAATTTGCTCGATTCTGTCAATAAATCTGTTATTCCCTATATGGAGGGAGCTTTAGGAATTAAGACATATTACTCTGAAAGGAGCAGTGAGTATCAAGATTTTGAGGCTCAGTTCCGGAGAACATTTTTGGCCAAGAATTCTGAGGAAGATAACCGGTACCCTGGATTTTATGCTTTGCAAGCACATGATAGCATTAAAATTGTCACTCAAGCAGTGGACAGAATGACTAAGAACAACAATAGCAGCCCAAATAATTTATTAAGAGAAATATTGTCTAGCAACTTCCATGGTTTAAGTGGCCAAATTAAATTTGAAGCCGGACAACTCTTGCGAAGTCCTATGTTACAGATAGTAAATGTGATTGGTAAGAGTTACAAAGAACTATGCTTTTGGACTCAACAACAGAGTTTCAACACAAGCCTCCCTACTGAACAAGGCGGGGATAATGTTGCTGGCAATACAGAATGTTTCCAAGGTGTACACTGGCCTGGGAATTTGCAGCGAGATCCAAAGGGCTGGAACATGCCTTCGGTACAAAATCGATTGAAAATCGCAGTCCGAAGCAGAACTTCATTTGCCAAGTTTGTCAAGGTTGATGATCAAAACAACTATAGTGGATTCTGCATTGATATTTTTGATCTTGTGCGTGGACTTTTGAAATATGATCTGCCATTTGATTATTATCCCATTAATGGAACCTATGACGATTTGGTTCGACTTGTCTATAACAAGACTTATGATGCTGCAATTGGAGACATGACCATACTAGAGGAAAGATTGCAGTATGTGGATTTTACTGTGCCATATGCAGAATCAGGATTGTCGATGATAGCTCCAACAAAGTCCGAAGAGTCAACATGGTTGTTTACAAAGCCTTTTACCTGGGAATTGTGGATGGTTACAGGTGCCATCTTGATTTACACAATGTTAGTAGTTTGGTACCTTGAGAGAAAACCAAATCCCGATTTTCATGGCAACTGGAAGAGCCAAATCAGCACCGCTCTTTGGTTTACCTTCTCCTCTCTTTTCTTTGCTCATAGGGAAAAAATGCATAGCAACTTGACTCGCGTGGTGATGGCGTCATGGCTCTTTCTAGTTTTGATTCTTAACTCAAGCTACACTGCTAGTCTTTCTTCAATGCTCACAGTTAAACAACTGCAACCAAATGTCACAGACATTCAGTGGCTGAAGAGGAACAATATGAAAATTGGTTGTGATGGCGACTCATTTGTTAGGTCTTACCTAGAGAAAGTAGAGAAGTTCAAGCCAGAGAACATCATAAACTTTACTGATGAATATACTTATGCTGATGCATTTGCTAATAAAAGCATAGCAGCTGCATTTCTTGAACTTCCATATGAAAAAGTATTCATTGGTGAATACTGCAACAGATTTGCTGGCTTCACTCCTATAAACAGATTTGGAGGATTAGGCTTTATATTCCAAAAAGGTTCACCCTTAACTAGAGATGTTTCTAAAGCTATATTACATCTCTCAGCAAATGCAGAGCTGAAGAGATTGGAAGAAAAGTGGTTGATTAATTCAAAGGAATGTTCCATGAACATGACCTCCAACAATGATACAGATAGTTTGAACCTTGGAAGCTTATGGGTTCTATATGTAATTTCTGGTGCAACTTCCACCATTTGTGTTATACTATCAACCATCCAGTGGCTAAAATCTAGTTACCAACATCAACATGTGGCACCAATAACCAATGATGCCACACCAAGTGATGAAGATGATAGTATGTTGAAAAGTGTAATAACACTTTCAAAGCAGATTTCTAGCAAAAGGGTCATTAATGCAAGTGAGGATTATGTTAGCACTGTTGATACTATTGAACATTGGGAGGAAATTGCTGCTCCAGTGCATGAAATCTTAGTTCTTAATTCTCCACCACCACCATTAGAGGTGCAAATCAACTCCTGA 2766 0.393 MHFPSTIPLSLARIWIPLNLLISFVLINCYLVEATNADNEVISIGAIIDGNSRIGKEQKVAMEIAAQSYNNTTKSFKLALYFRNSTKGPLTAISLAEEMINTQKVQVIIGMHTWSEAALVSEIGSQAQVPIISFAGPTITPPLMQIRWPFLVTLANNGTSYIECIADIVQAYSWQRVVAIYEDDAYGGDYGKLALLSEALQDVSSMIEYRLALPPISSLHDPKESIREELQKLMMQTQSRVFIVLQSSLEMVIHLFKEASTMRLVDRESVWIIPESITNLLDSVNKSVIPYMEGALGIKTYYSERSSEYQDFEAQFRRTFLAKNSEEDNRYPGFYALQAHDSIKIVTQAVDRMTKNNNSSPNNLLREILSSNFHGLSGQIKFEAGQLLRSPMLQIVNVIGKSYKELCFWTQQQSFNTSLPTEQGGDNVAGNTECFQGVHWPGNLQRDPKGWNMPSVQNRLKIAVRSRTSFAKFVKVDDQNNYSGFCIDIFDLVRGLLKYDLPFDYYPINGTYDDLVRLVYNKTYDAAIGDMTILEERLQYVDFTVPYAESGLSMIAPTKSEESTWLFTKPFTWELWMVTGAILIYTMLVVWYLERKPNPDFHGNWKSQISTALWFTFSSLFFAHREKMHSNLTRVVMASWLFLVLILNSSYTASLSSMLTVKQLQPNVTDIQWLKRNNMKIGCDGDSFVRSYLEKVEKFKPENIINFTDEYTYADAFANKSIAAAFLELPYEKVFIGEYCNRFAGFTPINRFGGLGFIFQKGSPLTRDVSKAILHLSANAELKRLEEKWLINSKECSMNMTSNNDTDSLNLGSLWVLYVISGATSTICVILSTIQWLKSSYQHQHVAPITNDATPSDEDDSMLKSVITLSKQISSKRVINASEDYVSTVDTIEHWEEIAAPVHEILVLNSPPPPLEVQINS* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0896 921 Gene3D - 741 797 - -
Lan19g0896 921 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 22 899 - -
Lan19g0896 921 CDD GluR_Plant 458 790 - -
Lan19g0896 921 PIRSF IGluLR_plant 14 900 IPR017103 -
Lan19g0896 921 PANTHER GLUTAMATE RECEPTOR 3.4 22 899 - -
Lan19g0896 921 SMART AABind_6 459 792 IPR001638 -
Lan19g0896 921 Pfam Ligand-gated ion channel 791 822 IPR001320 GO:0015276|GO:0016020
Lan19g0896 921 Gene3D - 338 459 - -
Lan19g0896 921 SUPERFAMILY Periplasmic binding protein-like I 39 451 IPR028082 -
Lan19g0896 921 SUPERFAMILY Periplasmic binding protein-like II 442 791 - -
Lan19g0896 921 Gene3D - 159 337 - -
Lan19g0896 921 CDD PBP1_GABAb_receptor_plant 43 419 IPR044440 -
Lan19g0896 921 Gene3D - 564 702 - -
Lan19g0896 921 Gene3D - 460 563 - -
Lan19g0896 921 SMART GluR_14 459 792 IPR001320 GO:0015276|GO:0016020
Lan19g0896 921 Pfam Bacterial extracellular solute-binding proteins, family 3 466 790 IPR001638 -
Lan19g0896 921 Pfam Receptor family ligand binding region 60 399 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0896 Lan-Chr19 16388562 16393347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0896 24 845 Ion Channels AT2G29120 31.818 2.96e-135 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0896 - - gmx:100818619 1345.87