Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0869 ATGTCAACGCCTAGTTCAACTTCACCTCTGAAATCTTCCGGCACCGTCTCCGACCAGTTTCCGGCGGGTCTCCGGGTACTTGTGGTGGATGATGACCCCACTTGCCTTATGATCCTTGATAGGATGCTTCGTGCTTGCTTCTATGAAGTGACCAAATGCAAGAGAGCAGAGATCGCATTGTCTCTTCTGAGAGAGAACAAAAATGGGTTTGATATTGTTCTAAGCGACGTGCATATGCCCGATATGGATGGATTTAAACTTCTAGAGCATATTGGATTGGAGATGGACCTTCCGGTTATTATGATGTCAGCAGATGATGGAAAACAAGTTGTAATGAAGGGTGTGACACATGGTGCTTGCGATTATCTAATTAAACCTGTGCGTATTGAGGCTTTGAAGAATATATGGCAGCATGTGGTTCGGAGAAGAAAGAACGGGTGGAAAGATCTGGAGCAATCGGGTAGTGTAGACGAAGGAGATCGACAGCTTAAGGCATCTGATGATGCAGATTATTCATCATCCGCAAATGAAGGGAAATCCTCAAAGAAGAGAAGGGATGAGGAAGAAGATCCAGATGAGAGGGATGATTCTTCAACATTAAAGAAGCCACGAGTCGTTTGGTCTGTTGAACTCCATCAACAGTTTATGGCTGCTGTCAATCAACTGGGTCTCGACAAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTGCCGGGTTAACGAGAGAAAATGTTGCTAGCCACCTCCAGAAATACCGTTTGTATCTTAGAAGGCTTAGTGGGGTATCACCGCTGCAGAATAACTTGAACAACCCCTTCATCAGCCCCCAAGCGGCATCATTTGGGGCAACTTCAATCGGTGGAATTGATCTTGAAACACTTCAAGCTTCTGGCCACCTCACAGCACAAAGTCTAGCCAAGCTTCAAGCAGCAGGGCTTGGCAGGCCAACCGCAAATGCAGGTGCATCTATATCTCTAGTGCAACAAAGGAACCTTTTCAGTTTTGAGAACCCAGGAATAAGATTTGGAGAAAACCAACTGCAACATTTGAGCAATAGTAAACCAACGAACTTACTTCACGGAATCCCTACCAACATGGAGCCAAAGCAGCTTGCCAATTTGCACCAACCTACCCAATCCCGTGGCAACTTAAACATGGGAGTAAATTCTTGTGCTGCACAGAGCAACCCCTTGTTGATGCATATGGCTCAATCCCAATCAAGAGGTCAGGTGCTAGGTGAAAATACTGGTTCTCATGTTAATAGGCTTTCATCATCTTTGGTGCAGCCTACATTACGAAATGAAATTTCTAATGGTGTTTTGGGAAATGGGATTTCTGGTATGAGCAACATAACTCCTGCTTATAATCCAGTTCAACAAAACACTTCAATGTTGAGTTTTCCCATGAACCAATCGTCTGAAATGCCTGTCGGTACTTTTCCTCTTGGAAGCACTCCACGGATATCCAATATGGCAACTAAAGGCATGTTTCATGAGGAAGTTTCTATGCGAATTAAGGGATCAAGTGGATCTGTTCCAAGTTATGATATCTTTAATGAACTCAATCATCATCAGAAGTCTCATGATTGGGACATAACGAATGTGGGCCTAACATTTGATGCCTCTCAGCATGCAAATCCTTTACAAGGTAACATTGATGTCTCACCGTCAGTTATAGTCCATCAGAATTGTCCCTCTATCCACCAGACTGGACAAAATAGAGATGCCATTTCAATTGGAAAAGGTATGTTCTCAATAGGCGAAGGCATGAGTCACGGTAATCTTCAAAACCTTGCTCAACACCTCAATACGCATCTTGTTGACAATTCAGTAAAGGTCAAGGCTGAAAGACTTCATGATCCATATGGGCAGGAGGATCTTATGAGCGCACTTCTGAAACAGCAAGGAGGCATTGGATCAGCTGAAAATGAGTTCGACTTTGATGGATATTCCTTAGACAACATTCCGGTCTAG 1977 0.4365 MSTPSSTSPLKSSGTVSDQFPAGLRVLVVDDDPTCLMILDRMLRACFYEVTKCKRAEIALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRRRKNGWKDLEQSGSVDEGDRQLKASDDADYSSSANEGKSSKKRRDEEEDPDERDDSSTLKKPRVVWSVELHQQFMAAVNQLGLDKAVPKKILELMNVAGLTRENVASHLQKYRLYLRRLSGVSPLQNNLNNPFISPQAASFGATSIGGIDLETLQASGHLTAQSLAKLQAAGLGRPTANAGASISLVQQRNLFSFENPGIRFGENQLQHLSNSKPTNLLHGIPTNMEPKQLANLHQPTQSRGNLNMGVNSCAAQSNPLLMHMAQSQSRGQVLGENTGSHVNRLSSSLVQPTLRNEISNGVLGNGISGMSNITPAYNPVQQNTSMLSFPMNQSSEMPVGTFPLGSTPRISNMATKGMFHEEVSMRIKGSSGSVPSYDIFNELNHHQKSHDWDITNVGLTFDASQHANPLQGNIDVSPSVIVHQNCPSIHQTGQNRDAISIGKGMFSIGEGMSHGNLQNLAQHLNTHLVDNSVKVKAERLHDPYGQEDLMSALLKQQGGIGSAENEFDFDGYSLDNIPV* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0869 658 MobiDBLite consensus disorder prediction 150 167 - -
Lan19g0869 658 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 258 IPR017930 -
Lan19g0869 658 SUPERFAMILY Homeodomain-like 199 259 IPR009057 -
Lan19g0869 658 MobiDBLite consensus disorder prediction 177 201 - -
Lan19g0869 658 Gene3D - 24 154 - -
Lan19g0869 658 Gene3D - 199 261 - -
Lan19g0869 658 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Lan19g0869 658 SUPERFAMILY CheY-like 23 144 IPR011006 -
Lan19g0869 658 PIRSF RR_ARR_type-B 6 649 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lan19g0869 658 SMART REC_2 24 136 IPR001789 GO:0000160
Lan19g0869 658 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 637 - -
Lan19g0869 658 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Lan19g0869 658 CDD REC_typeB_ARR-like 26 140 - -
Lan19g0869 658 MobiDBLite consensus disorder prediction 150 201 - -
Lan19g0869 658 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 202 255 IPR006447 GO:0003677
Lan19g0869 658 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 637 IPR045279 GO:0009736
Lan19g0869 658 Pfam Myb-like DNA-binding domain 204 254 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0869 Lan-Chr19 16155703 16159677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0869 58 658 Response Regulator Gene Family AT3G16857 48.233 1.36e-165 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lan19g0869 Response_reg 1.9e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0869 - K14491 gmx:100809583 987.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0639 4 8724750 8728230 Lan19g0869 19 16155703 16159677 LSH
Lan16g0191 16 1505645 1509624 Lan19g0869 19 16155703 16159677 LSH
Lan12g0881 12 15868048 15872007 Lan19g0869 19 16155703 16159677 PCT
Lan19g0869 19 16155703 16159677 Lan12g0881 12 15868048 15872007 PCT